HsaEX6045689 @ hg38
Exon Skipping
Gene
ENSG00000096696 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr6:7576959-7578562:+
Coord C1 exon
chr6:7576959-7577042
Coord A exon
chr6:7577779-7577886
Coord C2 exon
chr6:7578464-7578562
Length
108 bp
Sequences
Splice sites
3' ss Seq
TAAACTTCATTATGCTGCAGGAT
3' ss Score
6.71
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
AACTTGCACAGTGAAATATCTGGCAAACGAGACAAATCAGAGGAAGTACAAAAAATTGCTGAACTTTGCGCCAATTCAATTAAG
Seq A exon
GATTATGAGCTCCAGCTGGCCTCATACACCTCAGGACTGGAAACTCTGCTGAACATACCTATCAAGAGGACCATGATTCAGTCCCCTTCTGGGGTGATTCTGCAAGAG
Seq C2 exon
GCTGCAGATGTTCATGCTCGGTACATTGAACTACTTACAAGATCTGGAGACTATTACAGGTTCTTAAGTGAGATGCTGAAGAGTTTGGAAGATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096696-'34-27,'34-26,35-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCACAGTGAAATATCTGGCA
R:
TCAGATCTTCCAAACTCTTCAGCA
Band lengths:
180-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains