GgaEX6020318 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64620032-64621811:-
Coord C1 exon
chr2:64621728-64621811
Coord A exon
chr2:64620763-64620870
Coord C2 exon
chr2:64620032-64620130
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTATCCTGCTGTTTTACAGGAT
3' ss Score
10.64
5' ss Seq
GAGGTATCT
5' ss Score
7.27
Exon sequences
Seq C1 exon
AACTTGCACAGTGAAATCTGTGGGAAGCGAGACAAAGTTGAAGAGCTTCTCAAGCATGCAGATCAGTGCTCAGCTGCAATTAAG
Seq A exon
GATTATGAGCTTCAGGTTGCTTCCTACAGTTCTGGATTAGAAACGTTGCTCAACATACCTATCAAGAAGTGTGTGGTTCAGTCTCCAGCAGTGCTGATTCTGCAAGAG
Seq C2 exon
GCTAGTGAGGCTCAGGCTCGCTACATAGAGCTTCTTACAAGATCTGGAGATTATTACAAATTCTTAAGTGAAATGTTAAAGAGCATGGAGGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGAAATCTGTGGGAAGCGA
R:
CTTCAGGTCCTCCATGCTCTT
Band lengths:
175-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]