MmuEX6057975 @ mm10
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38188450-38190493:+
Coord C1 exon
chr13:38188450-38188533
Coord A exon
chr13:38189546-38189653
Coord C2 exon
chr13:38190395-38190493
Length
108 bp
Sequences
Splice sites
3' ss Seq
TAAACTTTGTTATTCTGCAGGAT
3' ss Score
9.26
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AACCTGCACAGTGAAATATCTGGCAAACGAGACAAATCAGAAGAAGTGCATAAAATCGCTGAACTTTGCGCAAACTCAATTAAG
Seq A exon
GATTATGAACTGCAGCTGGCATCGTACACCTCAGGGCTGGAAACTCTACTGAACATACCTATCAAGAGGACCATGGTTCAGTCCCCATCCGGGGTGATTCTGCAAGAG
Seq C2 exon
GCTGCGGACATTCATGCGAGATACATTGAACTGCTTACGAGGTCTGGAGACTACTACAGATTCCTAAGTGAGATGTTGAAGAGTCTGGAAGATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'14-25,'14-22,24-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCACAGTGAAATATCTGGC
R:
AGATCTTCCAGACTCTTCAACATCT
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types