DreEX6025002 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1813016-1813555:+
Coord C1 exon
chr2:1813016-1813099
Coord A exon
chr2:1813243-1813350
Coord C2 exon
chr2:1813457-1813555
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTGATTTCTATGTTCCCAGGAC
3' ss Score
8.57
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
GCGCTTTATTCTGAGATCAAGGGGAAGAAAGAAAAGGTGGATGCTGTGGTCAAAGACTCAGACACATGTGCTGCCTCCATAAAG
Seq A exon
GACTACGAGCTCCAGTTGGCGTCTTATAGTGCAGGTCTGGAGACTCTGCTCAACATTCCCATCAAAAAGACTATGCTGCAGTCTCCAGCCACTGTTCTCCGGGAGGAG
Seq C2 exon
GCAACAGATTTGCAGTCTCGCTACATTGAGCTCCTGACACGATCAAGTGACTACTACAAATTCCTTGGGGAAATGCTGAAAAACATGGAGGAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(30.7=100)
A:
PF0043516=Spectrin=PD(14.8=36.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTTATTCTGAGATCAAGGG
R:
ACTCCTCCATGTTTTTCAGCA
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]