BtaEX6099243 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47670503-47678841:-
Coord C1 exon
chr23:47678743-47678841
Coord A exon
chr23:47675452-47677746
Coord C2 exon
chr23:47670503-47674479
Length
2295 bp
Sequences
Splice sites
3' ss Seq
CTCTGATTTCCCTTCCACAGCTG
3' ss Score
10.09
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
GCTGCAGATATGCATGCTCGGTACATAGAGCTTCTTACAAGGTCTGGAGACTATTACAGATTCTTAAGTGAGATGCTGAAGAGTTTGGAAGATCTGAAG
Seq A exon
CTGAAAAATACCAAGATCGAAGTTCTGGAGGAGGAGCTCAGGCTGGCCCGAGACGCCAACTCGGAGAACTGCAATAAGAACAAATTCCTGGATCAGAACCTGCAGAAATACCAGGCGGAGTGCTCCCAGTTCAAAGCTAAGCTCGTGAGCCTGGAGGAGCTGAAGAGACAGGCCGAGCTGGACGGCAAGTCGGCCAAGCAAAACCTAGACAAGTGCTACGGGCAGATCAAAGAACTCAACGAGAAGATCACCCGGCTGACGTACGAGATCGAGGATGAGAAGCGCAGGAGAAAGGCCGTGGAGGACAGGTTTGACCAGCAGAAGAGCGACTACGACCAGCTGCAGAAAGCACGGCAGAACGAGAAGGAGAGCCTCGGCTGGCAGAAGATGGAGTCTGAGAAGGCCATCAAGGAGAAGGAGTTCGAGATAGAGAGGTTGAGAGTGCTGCTGCAAGAGGAGGGTGCCCGGAAGAGAGAATATGAAAATGAGCTGGCAAAGGTAAGAAACCACTATAATGAGGAGATGAGTAATTTAAGGAACAAGTATGAAACAGAGATTAACATCACCAAGACTACCATCAAAGAGATATCCATGCAGAAAGAGGATGATTCCAAAAACCTCCGCAACCAGCTCGATAGACTCTCGAGGGAGAACCGAGATCTGAAGGAGGAGATTGTCCGTCTCAACGACAGCATCCTGCAGACCACGGAGCAGCGGAGGCGGGCCGAGGAGGACGCCCTGCAGCAGAAGGCCTGTGGCTCCGAGGTGCTGCAGAAGAAGCAGTACCTGGAGATAGAGCTGAAGCAGGTCATCCAGCAGCGCTCCGAGGACAACGCCAGGCACAAGCAGTCCCTGGAGGAGGCGGCCAAGACCATCCAGGACAAAAACAAGGAGATCGAAAGACTCAAAACTGAGTTCCAGGAGGAGGCCAAGCGCCGCTGGGAATATGAAAATGAACTGGCTAAGGTCAGGGCCAATTATGACGAGGAAATCATCAGCTTAAAGAACCAGTTCGAGACGGAGATCAACATCACCAAGACGACCATCCACCAGCTCACCCTGCAAAAGGAAGAGGACACCAGCGGCTACCGGGCCCAGATAGACACCCTCACCAGGGAAAACCGGAGCCTCTCGGAAGAAGTCAAGAGGCTGAAGAACACTCTGGCCCAGAACACGGAGACCCTCAGGAGGGTCGAAGAGAACGTCCAGCAGCAGAAGGCCACCGGCTTGGAGATGTCGCAGCGGAAACAGCAGCTGGAGGTTGAGCTGAGGCAGGTGACGCAGATGCGGACGGAAGAGAGCGCCAGGTACAAGCAGTCTCTGGACGATGCCGCCAAGACGATCCAGGACAAAAACAAGGAGATCGACAGGTTGAAGCAGCTGATCGAGACAGAAGCCAGCCAGAGGAAGTGCCTGGAGGATGAAAACGCCAGGCTGCAGAGGGCGCAGGGCGAGCTGCAGAAAGCTCACAGCAGCGCCACGGAGACCATCAGCAAGCTGAAGGTGCAAGAACAGGAGCTGCTGCGCCTGAGGCTGGACTATGAGCGGGTGTCCCAGGAGAGGACTGTCCGGGACCAGGACATCGCCCGCTTCCAGACCTCCCTGAAGGAGCTGCAGCTGCAGAAACAGAAGGCAGAGGAGGAGTTGGCCAGGCTGAAGAGGGCAGCCTCCGAGGACTCCTCTAAGAGGAAGAAGCTGGAGGAGGAGCTGGAGGGCATGCGGAGGACCCTGAAGGAGCAGGCGATCAAGGTCACCAGCCTGACCCAGCAGCTGGAGCAGGCGTCCATCGTGAAGAAGCGGAGCGAGGACGAGCTGCGGCAGCAGCGGGACACGCTGGACGGCCACCTGCGGGAGAAACAGAGGACCCAGGACGAGCTGCGGAGGCTGGCCTCTGAGGTTGAGGCCCTGCGGCGTCAGCTGCTGCAGGAGCAGGAGAGCGTCAGGCAGGCGCAGACGCGCAACGAGCACTTCCAGAAGGCCATCGAGGACAAGAGCCGCAGCCTGAACGAGAGCAAGATCGAGATCGAGCGGCTGCAGTCACTGACCGAGAGCCTCACCAAGGAGCACCTGATGCTGGAGGAGGAGCTCCGCCAGCTCCGGCTGGAGTACGACGACCTCCAGCGGGGCCGCAGCGAGGCCGACCACGACAAGAATGCCACCATCGCGGAGCTCCGGAACCAGCTGCAGATCAGCAACAACCGCACGCTGGAGCTGCAGGGCCTGATTAACGATTTACAGAGAGAGAGGGAAAACTTGAGACAGGAAATTGAGAGATTCCAAAAGCAGGCCTTAGAG
Seq C2 exon
GCATCTAATAGGATTCAGGAATCCAAGAATCAGTGCACTCAGGTCGTGCAGGAGAGGGAGAGCCTCCTGGTGAAAATCAAAGTCCTGGAACAAGACAAGGCCAGGCTGCAGAGGCTGGAGGAGGAGCTGAGTCGCGCCAAGACGACTCTGGAAGCGGAAAGCAGGCTGAAGCAGCGCCTGGAGTGTGAGAAACAGCAGATCCAGAATGACCTGAACCAGTGGAAGACGCAGTACTCCCGCAAGGAGGAGGCCATCAGGAAGATCGAGTCAGAGCGAGAGAAGAGCGAGAGAGAGAAGAACAGCCTTCGGAGCGAGATTGAAAGGCTGCAGGCGGAGATCAAGCGGATCGAGGAGAGGTGCCGGCGGAAGCTGGAGGACTCCAGCCGGGAGACGCAGTCCCAGCTGGAGACGGAGCGCTGCCGGCTGCAGAGGGAGATCGACAGGCTCAAGCAGCGCCCCTATGGGTCCCACCGTGAGACCCAGACCGAGTACGAGTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'26-23,'26-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.430 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0076914=ERM=WD(100=13.5),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=2.8),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]