MmuEX6057973 @ mm9

Exon Skipping

Gene

ENSMUSG00000054889 | Dsp

Description

desmoplakin [Source:MGI Symbol;Acc:MGI:109611]

Coordinates

chr13:38282264-38290446:+

Coord C1 exon

chr13:38282264-38282362

Coord A exon

chr13:38283230-38285524

Coord C2 exon

chr13:38286565-38290446

Length

2295 bp

Sequences

Splice sites

3' ss Seq

TCTGATTTTTATATCCACAGCTG

3' ss Score

8.77

5' ss Seq

GAGGTATTC

5' ss Score

6.35

Exon sequences

Seq C1 exon

GCTGCGGACATTCATGCGAGATACATTGAACTGCTTACGAGGTCTGGAGACTACTACAGATTCCTAAGTGAGATGTTGAAGAGTCTGGAAGATCTAAAG

Seq A exon

CTGAAAAACACCAAGATTGAAGTTTTGGAAGAGGAGCTAAGACTGGCCCGGGATGCCAACTCGGAAAATTGCAATAAGAATAAGTTCCTAGATCAGAACCTGCAGAAATACCAGGCAGAGTGTTCCCAGTTCAAGGCCAAGCTTGTGAGCCTGGAGGAGCTCAAGAGACAAGCTGAGCTCGATGGAAAGTCAGCCAAGCAAAACCTAGACAAGTGCTACGGTCAGATCAAGGAACTCAACGAGAAGATCACCCGGCTGACCTATGAGATCGAAGACGAGAAGCGCCGGAGAAAGACCGTGGAGGACAGGTTCGACCAACAGAAGAATGACTATGATCAGCTGCAGAAGGCAAGGCAGTGTGAGAAGGAGAACCTCAGCTGGCAGAAGCTGGAGTCTGAGAAAGCCATCAAGGAGAAGGAGTACGAGATAGAGAGGTTGAGGGTTCTGCTGCAGGAAGAGGGCGCCCGGAAGAGAGAGTATGAAAATGAGCTGGCAAAGGTAAGAAACCACTATAATGAGGAGATGAGTAATTTAAGGAACAAGTATGAAACAGAGATTAACATCACCAAGACCACCATCAAGGAGATATCCATGCAGAAGGAAGACGATTCCAAGAATCTCAGAAACCAGATGGACAGACTCTCCCGGGAGAACCGAGATCTTAAGGATGAGATAGTCAGGCTCAATGACAGCATCTTGCAGGCCACGGAGCAGCGAAGGAGAGCCGAGGAGAACGCCCTGCAGCAGAAAGCCTGTGGCTCGGAAACCATGCAGAAGAAGCAGCGCCTGGAGATTGAACTGAAGCAGGTCATCCAGCAGCGCTCAGAGGACAACGCCAGGCACAAGCAGTCCCTGGAGGAGGCTGCCAAGACCATCCAGGACAAGAACAAAGAGATCGAAAGGCTCAAAGCTGAGTATCAGGAGGAGGCCAAGCGGCGCTGGGAATACGAAAATGAACTGAGTAAGGTAAGGAACAGTTACGATGAGGAGATCATTAGCTTAAAAAACCAGTTCGAGACCGAGATCAACATCACCAAGACCACGATCCACCAGCTGACCATGCAGAAGGAAGAGGACACCAGTGGCTACCGAGCGCAGATAGACAATCTCACCCGAGAAAACAGGAGCTTGTGTGAGGAGGTCAAGAGGCTGAAGAACACTCTAGCCCAGACCACCGAGAACCTCAGGAGGGTCGAAGAGAACGCCCAGCAGCAGAAGGCCACTGGCTCAGAGATGTCTCAGAGGAAACAGCAGTTGGAGATCGAGCTCCGACAGGTCACTCAGATGCGAACTGAAGAGAGCATGAGGTACAAGCAGTCCCTCGATGACGCTGCCAAGACCATCCAGGATAAGAACAAGGAGATCGAAAGGCTCAAACAGCTGGTCGACAAAGAAACCAATGAGAGGAAGTGCCTGGAGGACGAAAATTCCAAGTTGCAGAGAGTCCAGTATGACCTGCAGAAAGCCAACAACAGCGCCACGGAGGCCATGAGCAAACTGAAGGTTCAGGAACAGGAGTTAACGCGCCTACGGATTGACTATGAGAGGGTGTCCCAGGAGAGGACCGTGAAGGATCAGGACATCACGAGGATCCAGAGCTCCCTGAAGGATCTGCAGCTGCAGAAGCAGAAAGCGGAAGAGGAGCTGAGTAGGCTGAAGAGAACAGCCTCCGACGAGTCCTCCAAGAGGAAGATGCTGGAGGAGGAACTGGAGGCCATGAGGAGGTCTTTGAAAGAGCAAGCCGTCAAAATCACCAACCTGACCCAGCAGCTGGAGCAGGCGTCCATTGTTAAGAAGAGGAGCGAGGATGACCTCAGGCAGCAGAGGGATGTGCTGGATGGCCACGTGAGGGAGAAGCAGAGGACCCAGGAGGAGCTGAGGAGGCTCTCCTTGGATGTCGAGGCCCTCCGGCGGCAGCTGGTCCAGGAACAGGAGAATGTCAAGCAGGCTCACTTGAGGAATGAGCATTTCCAGAAGGCCATAGAAGACAAAAGCAGGAGCCTCAATGAGAGTAAAATAGAGATCGAAAGGCTACAGTCGCTCACGGAGAACCTGACCAAGGAACACTTGATGCTGGAGGAAGAGCTGAGGAACCTGAGGCTGGAGTACGACGACCTGCGGAGGGGCCGGAGTGAAGCGGACAGCGATAAAAACTCAACCATCTCCGAGCTAAGGAGCCAACTGCAGATCAGCAACAATCGAACCCTCGAGCTGCAGGGGCTGATTAATGATTTACAGAGAGAGAGGGAAAATTTGAGACAGGAAATTGAGAAATTCCAAAAGCAGGCTTTAGAG

Seq C2 exon

GCATCTAATAGGATCCAGGAGTCAAAGAGTCAGTGCACTCAAGTTGTTCAGGAGAGAGAGAGCCTGCTGGTGAAGATCAAAGTCCTGGAGCAAGACAAGGCGAGGCTGCAGCGGCTGGAGGATGAGCTGAACCGTGCCAAAGCAACGCTGGAGGCAGAAAGCCGGGTGAAACAGCGTCTGGAGTGTGAGAAGCAGCAGATCCAGAACGACCTGAACCAGTGGAAAACTCAGTATTCCCGCAAGGAGGAGACCATTAGGAAGATAGAGTCGGAAAGAGAGAAGAGCGAGCGAGAAAAGAACAGTCTCAGGAGTGAGATCGAGAGGCTCCAGGCGGAGATCAAGAGGATCGAAGAGAGATGCAGGAGGAAGCTAGAGGATTCTTCTAGGGAGACTCAGTCCCAGCTGGAATCCGAACGCTGCAGGCTTCAGAAGGAGATCGAGAAACTCAGGCAGCGCCCCTACGGGTCCCATCGGGAGACCCAGACGGAATACGAGTGGAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000054889-'22-24,'22-22,24-24=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.457 C2=0.088

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=2.8),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0)

Main Inclusion Isoform:

ENSMUSP00000115062