DreEX0028433 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1813457-1819985:+
Coord C1 exon
chr2:1813457-1813555
Coord A exon
chr2:1814771-1815268
Coord C2 exon
chr2:1816901-1819985
Length
498 bp
Sequences
Splice sites
3' ss Seq
CTATTCCACTTTTTATTCAGATG
3' ss Score
7.79
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAACAGATTTGCAGTCTCGCTACATTGAGCTCCTGACACGATCAAGTGACTACTACAAATTCCTTGGGGAAATGCTGAAAAACATGGAGGAGTTAAAG
Seq A exon
ATGCGGAACACCAAAATTGAGCTTTTGGAGGAGGAACTGAGACGCCTCAAGGACAACCTCAAAGATCAAAACCAGAAGAACAAATCACTGGAGGACAGTTTGACTCGCTTCCGCCTGGAGCTGACCCAGTCCAAAGAGCAGCTCATATCTATGGAGGAGGTGAAGAGAACCCAGGCCAGGCAGTGCAACACTGCTCAGGAAAGCCTGGATAGTACTCAGAACCAGCTGAAGAGTTTACAAGATGAGATGTCCCGCCTTACATTCCTCATCGAGGAGGAAAAGCGCAAGCGAAGGCTGGCCGAGGAGCGTTACACCAACCAGCAGGAGGAGTATGAGCTGGCCATGCGCAAGAGACAGAAAGAACTGGAGGAGCTCACTTTGTCCAAAAGTCAATTTGAAAGAGCCATCAAAGAGAAAGAGCGGGAGATTGAACGGCTGAAATTACAGCTGCAGGATGAGGCCTCCCGACGCTCGGCAGCAGAACTGGAGACCTCAAAG
Seq C2 exon
ACATCCATGATGATCCAGCGATCTGATTCAAACTACAAAGACATTGTGCAAGAGAGAGATAGTCTCTTAATCAAACTGAAGCTGCTGCAACAGGACAAAGATAAGCAGCAGCGATATGAAGAGGAGCTCAGGCGCATCAAACTTACCTTGGAATCAGAGACCAAACAGAAGCAACGTCTCCAGGATGAAATCGATAAAATCACCAAGGATTTCAAGTACTGGAAAAGCCAGTACGAGTTAAAAGAGGGGCAGATCAGACAGAGCGAGATGGATAGAGACAGAGTAGAGAGAGACCGAGCCTCCTTACAGAGTGAGATCCAAAGATTGACCGCTGAGCTGAGAAGTGTTGAGGAACGCTACAGAGGTCGTCTTCAGAGCTCAGACAAGGAAATCTCGGAGCTAATGCGTAAGAAGGAGTCTTTGGAAATTGAGCTGAGGAGATTGCAACAGCGTCCAGCTGCAACCTGGAAGCAAACCCAGACAGATGAGATCTCTAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.435 C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068115=Plectin=WD(100=5.0),PF0068115=Plectin=WD(100=5.4),PF0068115=Plectin=WD(100=5.4),PF0068115=Plectin=WD(100=5.2),PF0068115=Plectin=WD(100=4.6),PF0068115=Plectin=WD(100=5.4),PF0068115=Plectin=WD(100=5.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCTCGCTACATTGAGC
R:
CTCTGTCTGATCTGCCCCTCT
Band lengths:
352-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]