MmuEX6057973 @ mm10
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38190395-38198577:+
Coord C1 exon
chr13:38190395-38190493
Coord A exon
chr13:38191361-38193655
Coord C2 exon
chr13:38194696-38198577
Length
2295 bp
Sequences
Splice sites
3' ss Seq
TCTGATTTTTATATCCACAGCTG
3' ss Score
8.77
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
GCTGCGGACATTCATGCGAGATACATTGAACTGCTTACGAGGTCTGGAGACTACTACAGATTCCTAAGTGAGATGTTGAAGAGTCTGGAAGATCTAAAG
Seq A exon
CTGAAAAACACCAAGATTGAAGTTTTGGAAGAGGAGCTAAGACTGGCCCGGGATGCCAACTCGGAAAATTGCAATAAGAATAAGTTCCTAGATCAGAACCTGCAGAAATACCAGGCAGAGTGTTCCCAGTTCAAGGCCAAGCTTGTGAGCCTGGAGGAGCTCAAGAGACAAGCTGAGCTCGATGGAAAGTCAGCCAAGCAAAACCTAGACAAGTGCTACGGTCAGATCAAGGAACTCAACGAGAAGATCACCCGGCTGACCTATGAGATCGAAGACGAGAAGCGCCGGAGAAAGACCGTGGAGGACAGGTTCGACCAACAGAAGAATGACTATGATCAGCTGCAGAAGGCAAGGCAGTGTGAGAAGGAGAACCTCAGCTGGCAGAAGCTGGAGTCTGAGAAAGCCATCAAGGAGAAGGAGTACGAGATAGAGAGGTTGAGGGTTCTGCTGCAGGAAGAGGGCGCCCGGAAGAGAGAGTATGAAAATGAGCTGGCAAAGGTAAGAAACCACTATAATGAGGAGATGAGTAATTTAAGGAACAAGTATGAAACAGAGATTAACATCACCAAGACCACCATCAAGGAGATATCCATGCAGAAGGAAGACGATTCCAAGAATCTCAGAAACCAGATGGACAGACTCTCCCGGGAGAACCGAGATCTTAAGGATGAGATAGTCAGGCTCAATGACAGCATCTTGCAGGCCACGGAGCAGCGAAGGAGAGCCGAGGAGAACGCCCTGCAGCAGAAAGCCTGTGGCTCGGAAACCATGCAGAAGAAGCAGCGCCTGGAGATTGAACTGAAGCAGGTCATCCAGCAGCGCTCAGAGGACAACGCCAGGCACAAGCAGTCCCTGGAGGAGGCTGCCAAGACCATCCAGGACAAGAACAAAGAGATCGAAAGGCTCAAAGCTGAGTATCAGGAGGAGGCCAAGCGGCGCTGGGAATACGAAAATGAACTGAGTAAGGTAAGGAACAGTTACGATGAGGAGATCATTAGCTTAAAAAACCAGTTCGAGACCGAGATCAACATCACCAAGACCACGATCCACCAGCTGACCATGCAGAAGGAAGAGGACACCAGTGGCTACCGAGCGCAGATAGACAATCTCACCCGAGAAAACAGGAGCTTGTGTGAGGAGGTCAAGAGGCTGAAGAACACTCTAGCCCAGACCACCGAGAACCTCAGGAGGGTCGAAGAGAACGCCCAGCAGCAGAAGGCCACTGGCTCAGAGATGTCTCAGAGGAAACAGCAGTTGGAGATCGAGCTCCGACAGGTCACTCAGATGCGAACTGAAGAGAGCATGAGGTACAAGCAGTCCCTCGATGACGCTGCCAAGACCATCCAGGATAAGAACAAGGAGATCGAAAGGCTCAAACAGCTGGTCGACAAAGAAACCAATGAGAGGAAGTGCCTGGAGGACGAAAATTCCAAGTTGCAGAGAGTCCAGTATGACCTGCAGAAAGCCAACAACAGCGCCACGGAGGCCATGAGCAAACTGAAGGTTCAGGAACAGGAGTTAACGCGCCTACGGATTGACTATGAGAGGGTGTCCCAGGAGAGGACCGTGAAGGATCAGGACATCACGAGGATCCAGAGCTCCCTGAAGGATCTGCAGCTGCAGAAGCAGAAAGCGGAAGAGGAGCTGAGTAGGCTGAAGAGAACAGCCTCCGACGAGTCCTCCAAGAGGAAGATGCTGGAGGAGGAACTGGAGGCCATGAGGAGGTCTTTGAAAGAGCAAGCCGTCAAAATCACCAACCTGACCCAGCAGCTGGAGCAGGCGTCCATTGTTAAGAAGAGGAGCGAGGATGACCTCAGGCAGCAGAGGGATGTGCTGGATGGCCACGTGAGGGAGAAGCAGAGGACCCAGGAGGAGCTGAGGAGGCTCTCCTTGGATGTCGAGGCCCTCCGGCGGCAGCTGGTCCAGGAACAGGAGAATGTCAAGCAGGCTCACTTGAGGAATGAGCATTTCCAGAAGGCCATAGAAGACAAAAGCAGGAGCCTCAATGAGAGTAAAATAGAGATCGAAAGGCTACAGTCGCTCACGGAGAACCTGACCAAGGAACACTTGATGCTGGAGGAAGAGCTGAGGAACCTGAGGCTGGAGTACGACGACCTGCGGAGGGGCCGGAGTGAAGCGGACAGCGATAAAAACTCAACCATCTCCGAGCTAAGGAGCCAACTGCAGATCAGCAACAATCGAACCCTCGAGCTGCAGGGGCTGATTAATGATTTACAGAGAGAGAGGGAAAATTTGAGACAGGAAATTGAGAAATTCCAAAAGCAGGCTTTAGAG
Seq C2 exon
GCATCTAATAGGATCCAGGAGTCAAAGAGTCAGTGCACTCAAGTTGTTCAGGAGAGAGAGAGCCTGCTGGTGAAGATCAAAGTCCTGGAGCAAGACAAGGCGAGGCTGCAGCGGCTGGAGGATGAGCTGAACCGTGCCAAAGCAACGCTGGAGGCAGAAAGCCGGGTGAAACAGCGTCTGGAGTGTGAGAAGCAGCAGATCCAGAACGACCTGAACCAGTGGAAAACTCAGTATTCCCGCAAGGAGGAGACCATTAGGAAGATAGAGTCGGAAAGAGAGAAGAGCGAGCGAGAAAAGAACAGTCTCAGGAGTGAGATCGAGAGGCTCCAGGCGGAGATCAAGAGGATCGAAGAGAGATGCAGGAGGAAGCTAGAGGATTCTTCTAGGGAGACTCAGTCCCAGCTGGAATCCGAACGCTGCAGGCTTCAGAAGGAGATCGAGAAACTCAGGCAGCGCCCCTACGGGTCCCATCGGGAGACCCAGACGGAATACGAGTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'24-31,'24-25,28-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.457 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types