GgaEX6020319 @ galGal3
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
NA
Coordinates
chr2:65692113-65699438:-
Coord C1 exon
chr2:65699340-65699438
Coord A exon
chr2:65696206-65698497
Coord C2 exon
chr2:65692113-65694779
Length
2292 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTACCATTTTGTAGATG
3' ss Score
7.82
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
GCTAGTGAGGCTCAGGCTCGCTACATAGAGCTTCTTACAAGATCTGGAGATTATTACAAATTCTTAAGTGAAATGTTAAAGAGCATGGAGGACCTGAAG
Seq A exon
ATGAAAGCCACCAAAATTGAACTTCTGGAAGAAGAACTCAGACTTGCCAGGGATTCAAATTCAGAAACAAACAACAAGCATAAATTCCTGGAACAGAATCTGCAGAAGTACCAGATGGACATTTCTCAGCTCAAAGCAAAGCTGATGAGTTTGGAGGAGATGAAAAGACAGGCTGAAATGGATGGAAATTCTGCTAAGCAAAACCTGGACAAATGCTATGCCCAAATAAAGGATCTAAATGACAGAATAACCAGGTTGACTTACGAGACTGAAGATGAGAAAAGGAAAAGGAAGTTGCTGGAGGACAGATATGAGCAACAAAAGAATGACTACGACCAGCTGCAGAAAACAAGACAAAACGAGAAAGACAGCCTTGGCTGGCAGAAGTTAGAATCTGAGAAGGTCATCAAGGAGAAGGAGTACGAGATAGAAAGATTAAGGGTTCTCCTGCAGGATGAAGGCACACGGAAGAGGGAGTATGAAAATGAGCTGGCTAAGGTAAGAAACCAGTTTAGCGAGGAGATGAGTAATTTAAAGAACAAGTATGAAACAGAAATTAATATTAAGAAGACCACAATCCAGCAGATAGCTGCACAGAAAGATGATGATGCAAAAGGTCTCAGAGCCCAGGTTGACAGACTGTCAAGAGAAAACAGAGACCTTAAGGATGAGATTGTGAGGCTGAACGATGCCATTCTGCAAACCACAGATCAGCGGAGGAGGGCAGAAGAAGATGCTCTTCAGCAGAAGGCTTGCAGTTCTGAGGTGTCGCAGCAGAAGCACCAGTTAGAGCTGGAGCTGAAACAGATCATTCAGCTTCGTGGTGAAGACAACTCAAGATACAAGCAGGCTCTTGAAGAGGCTGCTGCTACTATTCAGGATAAAACTAAGGAGCTGGAAAGGCTAAAGCTTCAGCTTCAGGAAGAAGCTAAAAGCCGATGGGAGCTTGAAAATGAGTTGGCTAAGGTAAGGAACAGTTATGATGAGGAAATTATTAGCTTAAAGAACAAATATGAAACAGAGATTAATATCACAAAGACCACAATTCATCAGGTCACTATGCAAAAGGAAGAGGATACCAATAATTATAGAACACAGCTTGATAATGCTGTGAGAGAAAATAGGAATTTGTGTGAGGAAATTAGGAGACTGAAGAATACAATAACTCAAACAACAGATAATCTACGGAAAATAGAAGAGAATGCTCAGCAGCAAAAGGCAGCTGGCTCAGAGCTTTCTCAGAAGAAACAGCAGCTGGAGATTGAACTAAAACAAGTTATTCAGAGGCACTCTGACGAGAGCATGCGATACAAACAATCGCTTGATGATGCTTCTAAGACCATTAAAGAGAGAAACAAAGAGATTGAAAGGCTGAGAAAGTTGTTGGATGTAGAGACAAGTCAAAGAAAAGAACTAGAGGATGAGAACAATCAGTTAAAAAGAGTTCAGTTTGACCTTCAGAAAGCAAACACGAGTGCTACTGAGACAATTAACAAACTGAGGATCCAGGAGCAGGATCTGGCCAGACTGAAAATTGACTATGAAAGAGTTTTGCAAGAGAAAAAAGGCAGGGATCAAGAAAGTGCAAAGTTGCAAAGCACTATAAAAGACTTGCAGATCCAAAAACATAAGCTGGAGGAGGAACTTTGCAGGCAGAATAAGAATGTGATGGAGGAGACAGCCAGGAGGAAGAAACTGGACGAGGAAGTAGAAGGCATGAGGAGATCTCTGAGAGAGCAATCAGTTAAAATAACTAATCTCACACAGCAGATAGAGGAAGTGTCTATTGTAAAGAAGAGAAATGAAGATGACCTTAGACACCAAAGAGAAGTACTAGATGGCCACGTGAGAGAGAAACAAAGGTACATGGAGGAGATAAGAAAATACACCTCTGATCTTGAGACTTTACGTCGTCAGTTGGTACAAGAACAGGAGCAATTAAAACAGGCTCACCTGCGAAATGAGCACTTACAGAAAACCTCTGAGGAGAAGAGCAAAAACTTGAACGAGTGCAAAATTGAAATCGAAAGGCTTCAGTCTCTCACCGAGAACCTAACCAAGGAACACTTGTTACTGGAGGAAGAACTGCGAAATGTTAGATTGGAGTATGATGATCTCAAAATGGTCAGAAGTGAAGTTGATGAGAAAAATTCTGCCATTGCTGAACTAAAGAATCAGCTTCAGACAAGCAGCAAGCAAACCCTGGAACTTCAGGGGTTGATTAATGATTTACAGAAAGAAAGGGAAAAATTGAGACAGGAAATTGAAAAATTCCAAAAGCAGGCTCTGGAG
Seq C2 exon
GCATCCAATAGGATTCAAGAATCCAAAAATCAGTATAATCACATTATGCAAGAAAGAGAAACCTTGCTGATAAAAATGAGTGCTCTGGAGCAAGACAAAGCCAGGCTGCAGAGATTAGAAGAGGAGCTGAACCGTTTGAAAGTTAACCTGGAATCAGAGTCTCGTTTGAAGCAACGCCTGGAAAATGAGAAACAACAAATTCTGAATGACCTCAACCAATGGAAGAGCCAGCACTCCCGGACGGAGGAATCCATAAGGAAGATCCAGTGTGAGAGAGAGAAGAGTGAGAGGGAGAAGAACACCTTGAGGAGTGAGATTGAAAGGCTGCAGATGGAGATTAAAAGGATTGAGGAGAGATACCGGTGCAGACTGGAAGAGACTGCTGTCAAAAACCAGTCAGAGTTGGAGTCTGAACGTCTCAGGCTGCAGAGAGAGATTGAGAAACTTAAACAACGCCCATATGGGTCTCACAGATCTACTCAGACTGAAGAAGACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'24-24,'24-23,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.394 C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=4.9),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=4.8),PF0068115=Plectin=WD(100=3.9),PF0068115=Plectin=WD(100=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]