BtaEX6099271 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005980 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr23:47900804-47907668:-
Coord C1 exon
chr23:47907590-47907668
Coord A exon
chr23:47902162-47902968
Coord C2 exon
chr23:47900804-47901106
Length
807 bp
Sequences
Splice sites
3' ss Seq
GCCCCGTGCTTGCTCCGCAGACA
3' ss Score
11.02
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAACCCTTCCCTTGTCAAAAATGCGGTGCCTTCTTTTCCACCAAATCTAACTGTGAACGACACCAGTTGCGCAAACACG
Seq A exon
ACAGCCAGTCGGACGCAGAGGCCTCGGCGGCTGGCAGCGAAGTGCTGGACCTCACCGCCCGGGAGCTGCCCGCGCCAACCCCAGAAGGCGCCTCGGAGCCCAGCCCGGCCGCGGCCCCGGCCCGGGAGGACCCCCCGGGGGGCGCGCAGGAGGAGGCGGAGCAGGTGGCGACGGAGGAGGACCTGCATCCCGAAGAGGAGGACGCGCAGCCCACGGAGGAGGAGGAGGGGGAGGAGGAGTGCGCGGAGGAGGAGCCGGCCGAGGCCGCCGACGGCCCCGAGGAGGACACGGTCAGCAACAAGAGCCTGGACCTCAACCTCGCCAGCACGCTGATGGGCTTCAAGCTGGCCGAGGGCGAGGCGGGCGCGCAGGACCACAAGCACACCTGCCACGTGTGCGGCAAGAGCTTCAAGTTCCTCACGACCCTCAGCCGCCACCGCAAGGCCCACGACCGCGAGGAGCCCGGTGACGAGAGCGCGCCCCCCCGGGAGCACGAGGGGCCGCACCCGGCTGACCCTGAGCCCCCCGCCCCTGAGCCCCCGGCCGAGGCGGAGGTCACACCCGATGCCCCGGCGGAGAAGCAGAGCGAGGCAGCCGAGGGCCCCTCGGACGCGGACGCGGACGGGGACGGGGAGGGCCCCGCCGAGAAGAGACCGCTGGAGAAGAGTGACGACGACAAGAAGCCAAAGACAGACACGCCCAGGAGCGCAGCCAGCAAGGCGGACAAGAGGAAGAAGGTGTGCAGCGTGTGTAGCAAGAGGTTCTGGTCCCTGCAGGACCTGACCCGGCACATGAGGTCGCACACAG
Seq C2 exon
GAGAGAGGCCGTACAAGTGCCAGACCTGCGAGCGGACCTTCACGCTGAAGCACAGCCTGGTGCGCCACCAGCGGGTCCACCAGAAGGCCCGGCACGCCAAGCGCCACGGCAGGGACAGCGACCGGGAGGAGCACGCCGAGGAGGACAGCGAGAGCGAGTCCGCCCACAGTGGCGCGCACCCCGTGTCGGAGGGCGAGGGCGACGCGGGCCTGCACGCCAGCGCCCACGTGGCTCTCACGCGGAGCCGGAGGGAGAGCCTGGCCGCCAAGGACGCCGGCCGCCGGGAGGAGCGGGCGGCGGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005980-'17-21,'17-20,22-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.937 C2=0.961
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=88.9)
A:
PF0009621=zf-C2H2=WD(100=8.5),PF134651=zf-H2C2_2=PU(40.0=3.7)
C2:
PF134651=zf-H2C2_2=PD(56.0=13.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCTTGTCAAAAATGCGG
R:
AGGCTCTCCCTCCGGCTC
Band lengths:
334-1141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]