GgaEX1050329 @ galGal3
Exon Skipping
Gene
ENSGALG00000012799 | RREB1
Description
NA
Coordinates
chr2:65834136-65856890:-
Coord C1 exon
chr2:65854151-65856890
Coord A exon
chr2:65838522-65839268
Coord C2 exon
chr2:65834136-65835053
Length
747 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGTTTGCTTGCAGACA
3' ss Score
10.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGCCAGTCCCAAGGCAGCGAGCAGCTCCACTGGGTGTGACAAATCAGGGAATGCCAAAGCAAAAATGACAATCGTGACCGCCATTCAGAGAGACTCCAGCCTTCCCAGTGACCTGACTCAGGCCTCTGATCCCGAGCCGTCTCCCATTGCTGACACTGGGTTGACTAAGAAGAGAGGTAGAAAGAAAGGAACAAAAAACAAGCCTAAACTGAGCAGTGGTGTGGATCTGGAGTCAAGCGGGGAGTTTGCCAGCATAGAGAAGATGCTGGCTACCACAGACACTAATAAATTTAGCCCGTTTCTACAGTCCACTGACAATTTCAAGGAAGAAAGCGGCCAAAATGGAACAAGTGAGGATGAAAAGGAAACTCCTGAAGATAAGCTGCTGAGAGGGAAGAGGAACACTTACTCAGACTGCCCGCAAAAAATAACCTGTCCTTACTGTCCTCGAGTCTTTTCGTGGGCAAGTTCCCTACAGCGGCACATGCTCACTCACACAG
Seq A exon
ACAGTCAGGCTGACACAGAGGCACCTGCTACAGGAGGTGAAGTCTTGGACCTGACGTCCTGTGAGAAGGAGCAGCCAGAGGAAGTCAGCGAGCTACCAGGGAGTGAGTGCAGCCCCCAGGAGGAGCAAAAGGCTGACTCCCCTCCAGCAGAAGAGGATGCCGAAGAAAAAGCAGATGAATATGAAGAGGGCCCTGAGGAAGATTCTGTAAGTAACAAAAGTCTTGACCTCAATTTTGCCAGCAAGTTAATGGACTTCAAGCTGGCAGAGAGTGACCAGAGCGCAGGCAGCAGTTCTCAGACTGAAAGGAAACATGCCTGTGATGTTTGTGGCAAAACCTTCAAGTTTGCTGGCACTCTTAGCCGTCACAAAAAGGCCCACATTCGTGAGGACAGAAAAGATGAAAGGAGCAGTGAGGATGAAAGCAAAAGCATCCAGGATGATGCAGGAGCTCCCTCGATGCAGGACTCCGGTCTTGAGCAGGAAGAGTCTCCGATGGACTTGAAGGTAGTGGAGTCTCCTCTGGACTGTGAGGCAACAGGAAAGGAGAATGAAGAGAGCGAAAGCATCTCTGAGGGGGAAGGCACAGAGAGAAAGTCCACTGAGAAGAGCAGTGATGACAAAATACCAAAGACTGATGAGGCTAAGAGTACTGCAAAAGCAGACAAAAGAAAGAAAGTCTGTACTGTGTGCAACAAGCGTTTCTGGTCTCTGCAAGATTTGACGCGACATATGCGGTCTCATACAG
Seq C2 exon
GCGAGAGACCGTACAAGTGTCAAACCTGTGAACGGACCTTCACTCTGAAGCACAGCCTGGTTCGTCACCAGCGCATACACCAGAAAGTCAAAAATACTCGAAACCACGGGAAGGAGAGCGACAAGGAGGAGACCCAGTCGAGGTGCGGGGAAGACAGCGAAAATGAGTCAAGCCACAGTGGCACCAACCCCATCTCAGAAAACGAGTGCGACTTTGCGGGGGTTGTTGGCAGCCACCCATCCGGCACCAGAAGCCGAAAGGAGTCCCTGGTCGGAGCGGCCAAGGATGTGCCCTGCGAAGAGGAGAGGCCGAGCGGGCAAGGAGCCACTGCCGACCTCGTGGAGCCCGCCAAGAGCACACAGAAGCAGCCCGCAAAAGACCAGGAGCCTCGGGGTAGCTCCGAGCTAGAGAGACCGTCGGGTTTCATTCAAGACTTGCTGGAGATGCACAACAAAAAGTCTCCCATGAATCACATTCTTGCCTCTGCAGACAGCACGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799-'14-20,'14-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.832 C2=0.922
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.5)
A:
PF0009621=zf-C2H2=WD(100=9.2),PF134651=zf-H2C2_2=PU(40.0=4.0)
C2:
PF134651=zf-H2C2_2=PD(56.0=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGGCTACCACAGACAC
R:
TCCTTCCCGTGGTTTCGAGTA
Band lengths:
354-1101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]