DreEX0063463 @ danRer10
Exon Skipping
Gene
ENSDARG00000042652 | rreb1b
Description
ras responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-070912-273]
Coordinates
chr2:21398459-21404243:+
Coord C1 exon
chr2:21398459-21398620
Coord A exon
chr2:21399248-21400006
Coord C2 exon
chr2:21401902-21404243
Length
759 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTTTGACTTTGTAGAAA
3' ss Score
7.07
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTCAGAAGCCGTACCCTTGTCCTCAGTGTGACTCGTTCTTCTCCACCAAGTCAAACTGTGAGCGACACCTGCTTCGCAAACATGGAGTCTCGAATCGGGCACTTCAAAACAGTGGATCTCGACTCAAACCTAAGACAGATGAAGAATCCTTAGGAAGCACAG
Seq A exon
AAAGTGTATGCGACACTGAACATCCTGTAGCCGAAGGTACTATGGATCTGAGCTCTGTCAACACCAAACAAGAAGAATCTCCAGAAGCGCCAGAACGAACAGGACAATCAGCCCCTGAACAAGCAGACAGCAGCACGGATCCAAACCAAACTCAGCCAGCTGAGGAAAATCCTGAGATGGTGGAAAAAGATGATGATGATGATGATGATGATTCTCAAAGCAGCATGAGTCATGAAATGAGCCTTGTCAGCAATCTTGTTGTAGATGTCCAGCTTTCTGGAGAGGAGCAGCACCAGTCTAAATCAGCCCCTGAAGTGGTTTCCCCTCCAGATGAGTTCCCACACACATGTGCCTCCTGTAAGAAGACCTTTCGTCATGCAGCCACTCTGAGCCGACACCAGAAAACCCACCTTCAGGAGGTCCAGCCAGAGGATGGAGCCAAGAAGGGAAGACGCCAAGCTCCTCCACAAAATCCAATTCCAGTACCAAGTAAAGAGATGGAGCAGGACGCAAAGTCAGAAGATGATGAAAAGGAGGAGAACAGCAGCTGTGTGGAAAGTGGTGTTGATGAGGAAGAGAAGGAGAGGGAAGATATGAGTGAAGATGAAGAAGAGACTCCTTCCTCAGAGCTCCAGGCCTTAGAAGAGGAGGGCAACTCAACCAGAGGCAAAGCAGATAAGAGGAAGAAGATCTGCACCGTGTGCAGCAAACGCTTCTGGAGCCTGCAAGACTTGACTAGACACATGCGCTCACATACTG
Seq C2 exon
GTGAGCGACCTTATAAGTGCCAAACCTGTCATCGTACCTTCACCCTGAAGCACAGTCTGGTACGGCACCAACGCGTCCACCAGAAACCATCGGATGAAAAAGGGAGCGATGACGCAGAAATGAACGAAGAAACAGATGGAGCAAAAGATGAAGCTGGAGTGCTGGAGGAGAAAGAGTTCAATGAAGCTGTTCAGAGTGAGGCTGAACACAAAGAGGAAGAGATTGGCGGACGCATGGAGGAAGACGATGCCAAGCAGCTTCCTGAAGAAACATCCATGGGGGTGAATTCTGCCGAAGAAGCTCTGCCGGATGAGGACGAACAGGAAGAACAACAAACCGAGGAACCGTCAGAAGAGGCCCGATCAGGCTGTGACCCAGAACCTGCAAAAACCAGCAACCACAGCTGTACAGTGGCTCAGGAAGACACAGAGATGCCCGCTCAGTGAATAGATCATTCACTGTCCATTTTGTGCCATAGTTTATCAAGCTTCCACAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042652_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.945 C2=0.946
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=27.3)
A:
PF0009621=zf-C2H2=WD(100=9.1),PF134651=zf-H2C2_2=PU(40.0=3.9)
C2:
PF134651=zf-H2C2_2=PD(56.0=9.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTCGAATCGGGCACTTC
R:
TTCTTCAGGAAGCTGCTTGGC
Band lengths:
347-1106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]