MmuEX6057942 @ mm9

Exon Skipping

Gene

ENSMUSG00000039087 | Rreb1

Description

ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]

Coordinates

chr13:38021427-38043869:+

Coord C1 exon

chr13:38021427-38024358

Coord A exon

chr13:38038726-38039532

Coord C2 exon

chr13:38040512-38043869

Length

807 bp

Sequences

Splice sites

3' ss Seq

CTGTCTGCTTGCTTACACAGACA

3' ss Score

8.64

5' ss Seq

CAGGTATGA

5' ss Score

9.46

Exon sequences

Seq C1 exon

CCCAGGAAGCTCCATCCCCAAAGCTGCCGCCACCCCCACTGACACCACAAGCTCTAAAGAATCCAGTGAGCCACCCCCTGCAGCCAGCAGCCCTGAGGAAGCCTTGCCTACTGAACAAGGGCCGGCTGCCACTTCCTCGTCGAGGAAGAGGGGCAGGAAAAGGGGACTGAGAAACCGGCCCCTCCCCAACAGCAGTGCTGTGGACCTGGACTCCAGTGGGGAGTTTGCTAGCATCGAGAAGATGCTGGCCACCACAGATACCAACAAGTTCAGTCCCTTTCTGCAGACTGCAGAGGATGACACTCAGGAAGAGGTGGCTGGAGCCCCTGCCGACCAGCATGGGCCCGCTGATGAGGAGCAAGGTAGCCCCGCAGAAGACAGGCTGCTGAGAGCAAAGCGGAACTCCTATGCCAACTGCCTGCAAAAGATCAACTGTCCCCACTGTCCCCGGGTCTTCCCTTGGGCCAGCTCCCTGCAGCGGCACATGCTTACACACACTG

Seq A exon

ACAGCCAGTCAGACACAGACACGTTGACCACCCCAGGTGAGGTGCTGGATCTCACAGCACAGGCTAAAGAGCAGCCGCCAGCAGAGGGAGCCAGTGAGATCAGTCCGGCTTCACAGGACCTTGCTATCAAAGAGGCCAAAGCAGCAGCAGCTCCCTCTGAGGAGGAGGAAGAAAAGGAGACAGAGGAGAACCCAGAGCCAGAGGAAGAGTGTCGTGTGGAAGAGAGCACTGGGGCTGCAGATGCCCCCGAGGAAGACACAGCCAGCAACCAGAGCCTGGATCTTGACTTCGCCACCAAGCTGATGGACTTCAAGCTGGCAGAGAGTGAGGCAGGCTCTGTGGACAGCCAAGGCCCAGCCCAGCAGGAGCCAAAGCATGCCTGCGATACCTGTGGAAAGAACTTCAAGTTCCTGGGCACCCTGAGTCGCCACAAGAAGGCACACAGCTGCCAGGAGCCGAAGGAGGAGGAAGCAGCGGCACCTTCGCTGGAGAATGAGGGCGTTGGCAGAGCGGTTGAGGGGCCCTCGCCTTCCCCTGAGCCTGAAGAGAAACCAGCCGAATCCCTAGCAATCGATCCAACACCAGGAACCAGGGAGGCCTCAGTGGCGAAACAGAATGAAGAAACAGAGGGTCCCACTGATGGGGAAGGTACGGCTGAGAAGAGGGGTGACGGTGACAAAAGACCAAAGACAGACTCCCCCAAAAGCATGGCCAGTAAGGCAGACAAGAGGAAGAAGGTTTGCAGTGTATGCAACAAGCGGTTCTGGTCCCTGCAGGACCTCACCCGGCACATGAGGTCACACACAG

Seq C2 exon

GAGAAAGGCCATACAAGTGTCAGACCTGTGAGCGAACCTTCACCTTAAAGCACAGCCTGGTTCGACACCAGAGGATCCACCAGAAAGCCAGGCACAGCAAGCACCACGGGAAAGACAGCGACAAGGATGAGCGGGCTGAGGAGGACAGTGAGGACGAGTCCACCCACAGTGCTACCAACCCTGCCTCTGAGAATGAGGCCGAGTCAGCTCCCAGCACCAGCAACCACGTAGCTGTCACCAGGAGCCGGAAAGAGAGCTTGTCCACTTCTGGGAAGGAATGTAGCCCAGAGGAGAGAGCCGCAGCTGAGCAGGCAGCTGAGCCCAGTGCCCCCAAAGAGCAGGCGTCTCCAGGTGAAACAGACCCCCAGAGCCCGGCAGCCATCGTGCAAGACTTGCTGGAGCTGTGCGGCAAGAGGCCTGCCCCAATCCTGGCGGCCACCGACGGGGCCTCACAGCTCCTGGGCATGGAGTGACAGCCCGCCCTGTCTCCATCAGCTCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000039087-'23-23,'23-21,30-23=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.375 A=0.926 C2=0.972

Domain overlap (PFAM):

C1:

PF139121=zf-C2H2_6=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=PU(38.5=1.0)

A:

PF0009621=zf-C2H2=WD(100=8.5),PF134651=zf-H2C2_2=PU(40.0=3.7)

C2:

PF0142811=zf-AN1=PD(82.5=20.9),PF0009621=zf-C2H2=WD(100=14.6)

Main Inclusion Isoform:

ENSMUSP00000049265