BtaEX6099765 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000445 | PDE6C
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr26:14964506-14965929:+
Coord C1 exon
chr26:14964506-14964658
Coord A exon
chr26:14964759-14964848
Coord C2 exon
chr26:14965789-14965929
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCCGCCATCCGTAGGTC
3' ss Score
10.72
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACAGCCATTTTTCTGACTTCATGGACAAACAAACCGGGTATGTCACCAGGAACCTGCTGGCAACCCCCATCGTGATGGGCAAGGAGGTTCTTGCTGTGTTTATGGCAGTTAACAAAGTAGACGCATCCGAATTTTCCAAACAGGATGAAGAG
Seq A exon
GTCTTTTCCAAATACCTCAGCTTTGTTTCTATCATCCTAAAGCTTCACCACACCAACTACCTGTACAATATTGAATCCCGAAGAAGTCAG
Seq C2 exon
ATTCTTATGTGGTCAGCCAACAAAGTATTTGAAGAGCTCACAGATGTTGAGCGACAGTTTCACAAAGCACTCTACACTGTCAGGACATACCTGAACTGCGAACGATACTCCATTGGGCTGCTGGACATGACCAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000445-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTCACCAGGAACCTGCTG
R:
TGTCGCTCAACATCTGTGAGC
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]