DreEX6067664 @ danRer10
Exon Skipping
Gene
ENSDARG00000100397 | pde6c
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
Coordinates
chr12:5098543-5100926:+
Coord C1 exon
chr12:5098543-5098695
Coord A exon
chr12:5100623-5100712
Coord C2 exon
chr12:5100786-5100926
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGTTGCGAATGTTTTTCAGGTA
3' ss Score
9.11
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AATCCCAGGTTCAGTGATTTTGTGGACAAGCAGACGGGATACACCACTAAAAACATGATGGCCGCTCCACTCATGCAGGGAAAAGACCCACTCGGTGTGGTCATGGCAATAAACAAGGTCGGAGCAAACGAATTCTCCAAAGAAGATGAAGAT
Seq A exon
GTATTCAGCAAGTACATCATATTTGCCACAGTCATCGCCCTGCAGCATTACACCAATTACATGTATAATGTGGAATCCAGAAGAAGCCAG
Seq C2 exon
GTTCTTCTGTGGTCTGCGAGCAAAGTGTTTGAAGAGCTGACGGACATCGAGCGTCAGTTTCACAAGGCTCTGTACACCGTCAGAACTTACCTTCAGTGCGAAAGGTACTCGTGCGGCCTGCTGGACATGACCAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100397-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(32.9=100)
A:
PF0159021=GAF=PD(9.2=46.7)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCACTCATGCAGGGAAAA
R:
GACGGTGTACAGAGCCTTGTG
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]