GgaEX6040500 @ galGal3
Exon Skipping
Gene
ENSGALG00000006626 | PDE6C
Description
NA
Coordinates
chr6:21473313-21474054:-
Coord C1 exon
chr6:21473902-21474054
Coord A exon
chr6:21473697-21473786
Coord C2 exon
chr6:21473313-21473453
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTGTCATTTTTAGGTC
3' ss Score
13.49
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AATAACCATTTTTCGGACTATCTGGACAAAAAAACGGGTTATACAACTGTCAATATGATGGCAATCCCAATCACACAGGGTAAAGAGGTGCTTGCTGTTGTCATGGCTCTCAACAAATTAAATGCCAGTGAGTTCTCAAAAGAGGATGAAGAG
Seq A exon
GTCTTTAAGAAATACCTCAATTTTATATCTTTGGTCCTAAGAAACCATCATACATCCTATCTCTACAACATTGAATCCCGAAGAAGTCAG
Seq C2 exon
ATGCTTTTGTGGTCTGCCAACAAAGTATTTGAAGAGCTAACAGACATAGAACGGCAGTTTCACAAAGCACTGTATACTATTCGAATGTATTTAAACTGTGAAAGATATTCTGTTGGTCTGCTGGACATGACTAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006626-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATCCCAATCACACAGG
R:
CAGTGCTTTGTGAAACTGCCG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]