RnoEX6007216 @ rn6
Exon Skipping
Gene
ENSRNOG00000016593 | Pde6c
Description
phosphodiesterase 6C [Source:RGD Symbol;Acc:1309844]
Coordinates
chr1:256831556-256833141:+
Coord C1 exon
chr1:256831556-256831708
Coord A exon
chr1:256831808-256831897
Coord C2 exon
chr1:256833001-256833141
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCTGTGACCTATAGGTC
3' ss Score
9.51
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AACAGCCATTTTTCTGACTTTATGGACAAGCAAACTGGATATGTCACCAGGAATCTGCTGGCAGTCCCCATCATGACGGGCAAGGAGGTTCTTGCTGTGGTCATGGCAGTGAACAAAATCAACGCTCCCGAGTTTTCCAAACAGGATGAGGAG
Seq A exon
GTCTTTTCCAAGTACCTCAGCTTTGTTGCGATCGCTCTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG
Seq C2 exon
ATCCTTATGTGGTCAGCCAATAAAGTATTCGAGGAGCTCACTGACGTTGAGCGACAGTTTCACAAGGCCCTGTACACCGTCAGAACATACCTGAACTGCGAGCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016593-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGCTGTGGTCATGGCAG
R:
CGCTCGCAGTTCAGGTATGTT
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]