MmuEX0034190 @ mm10
Exon Skipping
Gene
ENSMUSG00000024992 | Pde6c
Description
phosphodiesterase 6C, cGMP specific, cone, alpha prime [Source:MGI Symbol;Acc:MGI:105956]
Coordinates
chr19:38139971-38141507:+
Coord C1 exon
chr19:38139971-38140123
Coord A exon
chr19:38140223-38140312
Coord C2 exon
chr19:38141367-38141507
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCTGTGGCCCGTAGGTC
3' ss Score
10.39
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AACAGCCATTTTTCTGACTTTATGGACAAGCAAACTGGATATGTCACCAGGAATCTGCTAGCAGTCCCGATCGTGGCAGGCAAGGAGGTCCTTGCTGTGGTCATGGCAGTGAACAAAATCAGCGCTCCCGAGTTTTCCAAACAGGATGAGGAG
Seq A exon
GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG
Seq C2 exon
ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024992-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCCTTGCTGTGGTCATG
R:
CGATCGCAGTTCAGGTACGTC
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types