BtaEX6100107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008100 | GOLGA7B
Description
Bos taurus golgin A7 family, member B (GOLGA7B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076954]
Coordinates
chr26:18866378-18868359:+
Coord C1 exon
chr26:18866378-18866503
Coord A exon
chr26:18868012-18868164
Coord C2 exon
chr26:18868258-18868359
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTCTCTCCCTCCAGATC
3' ss Score
15.01
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
Exon sequences
Seq C1 exon
GTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGCCAGTTCCAGACCAAGTTCCCCCCAGAGCTGGACAGTCGG
Seq A exon
ATCGAGCGGCAGCTCTTTGAGGAGACCGTGAAGACCCTCAACAGCTTCTACGCGGAGGCCGAGAAGATTGGGGGCAGCTCTTACCTCGAGGGCTGCCTGGCCTGTGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
Seq C2 exon
GTTCTCAAGAAGATCTCCCGCTACATCCAGGAGCAGAATGAGAAGGTCTTTGCCCCCCGAGGCCTCCTACTTACAGACCCCGTGGAGCGTGGGATGAGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008100-'4-4,'4-3,12-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=61.9)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACAATCTGCAGGAGCTC
R:
AACTCTCATCCCACGCTCCA
Band lengths:
228-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]