HsaEX0027988 @ hg38
Exon Skipping
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr10:97859458-97864269:+
Coord C1 exon
chr10:97859458-97859583
Coord A exon
chr10:97863930-97864082
Coord C2 exon
chr10:97864168-97864269
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGCTCTGTCCCTTTCTCCAGATC
3' ss Score
11.24
5' ss Seq
AAGGTGGCC
5' ss Score
3.58
Exon sequences
Seq C1 exon
GTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCACTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTCCAGACCAAATTCCCCCCAGAGCTGGACAGCCGG
Seq A exon
ATCGAGCGGCAGCTCTTTGAAGAGACTGTGAAGACCCTCAACGGATTTTACGCAGAGGCTGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
Seq C2 exon
GTTCTCAAGAAGATTTCCCGCTACATCCAGGAGCAGAATGAGAAGATCTTTGCACCTCGAGGCCTCCTACTTACAGACCCTGTGGAGCGTGGGATGAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(81.2=61.9),PF139001=GVQW=PU(5.3=2.4)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
ENST00000370602fB16483
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACAATCTGCAGGAGCTC
R:
AACCCTCATCCCACGCTCC
Band lengths:
228-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development