DmeEX6023472 @ dm6
Exon Skipping
Gene
FBgn0039427 | CG5447
Description
This gene is referred to in FlyBase by the symbol DmelCG5447 (FBgn0039427). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 3R:26452534..26454585. Its molecular function is described by: protein-cysteine S-palmitoyltransferase activity. It is involved in the biological process described with: Golgi to plasma membrane protein transport; peptidyl-L-cysteine S-palmitoylation; protein targeting to membrane. 8 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
Coordinates
chr3R:26452854-26453908:+
Coord C1 exon
chr3R:26452854-26453022
Coord A exon
chr3R:26453089-26453241
Coord C2 exon
chr3R:26453569-26453908
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCATATCGATTCTCGTGCAGATT
3' ss Score
7.33
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CGACAACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCGGTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAGGTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATACACGGCTGCCCGCTGAGCTGGAGGGCATG
Seq A exon
ATTGAAAGACACGTCTTCGAGGCCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCCTGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGATCTATATGTGCTCCGAAACGCACTATGAAAAG
Seq C2 exon
ACCCTTCGCAAGATATCCAAATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAGCTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATTCGATCGTCCGGGGCGAACGTGACTTCCGCTTTCCCATTCAGCCAACGAGTTTTTCATGTGAGATCGAGCAGCTACAGTCGCATCAACAGGCATGTGAAGGAGAAGAGTCCGTTTCAGCAATTATCAAGCAAAAGTCAGCGCCATCAGAGTGCGTTTCCAAAAATATAAATCAATAAAAAGCTGTGGAAGCAGCTAAAGCTTTATAACCTATAACCATATGT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0039427-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=48.1)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=PD(31.3=76.6)
Main Inclusion Isoform:
FBpp0303185
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0084384
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTCCATACACGGCTGC
R:
GTTGATGCGACTGTAGCTGCT
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)