GgaEX1026980 @ galGal4
Exon Skipping
Gene
ENSGALG00000003483 | GOLGA7
Description
Golgin subfamily A member 7 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZLC9]
Coordinates
chr22:2584741-2586165:+
Coord C1 exon
chr22:2584741-2585042
Coord A exon
chr22:2585537-2585689
Coord C2 exon
chr22:2586064-2586165
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATCTGATTTCTCCTTCAGATT
3' ss Score
9.04
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGTTTGCCGCTCTGTTTCGCTGCGGCGGGGGCGCTTGCGCACTGCCGCTCTCTGGGCCTGATGAGGCGACGGCGCATGCGCGGAACGTCGCTTCCGCCTTTTCCCCGGCCCGGAGCCTACTGGCCGCCTTTGCGACAGCCTGAAGTGAGCGGCGGCGCCCGCGGGAGCGGAGCGAGGCGGCCGCGGTGCGATGAGGCCGCAGCAAGCGCCCGTGTCGGGCAAAGTGTTCATCCAGCGTGACTACAGTGGTGGGACACGCTGCCAGTTCCAGAGCAAGTTCCCGGCCGAGCTGGAGAACCGG
Seq A exon
ATTGATAGGCAGCAGTTTGAAGAGACTGTCCGAACGCTGAATAACCTTTATGCCGAAGCTGAGAAACTTGGGGGCCAATCCTACCTTGAAGGGTGTCTGGCCTGTCTGACTGCCTATACTATCTTCTTGTGCATGGAAACACATTATGAGAAG
Seq C2 exon
GTTCTAAAGAAAATTGCCAAGTTCATTCAGGAACAGAATGAGAAGATCTATGCTCCTCAGGGCCTCCTTCTGACCGACCCCATTGAAAGAGGACTAAGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003483-'2-2,'2-0,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=70.3)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCGACAGCCTGAAGTGAG
R:
AATGGGGTCGGTCAGAAGGAG
Band lengths:
257-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]