GgaEX1026980 @ galGal3
Exon Skipping
Gene
ENSGALG00000003483 | GOGA7_CHICK
Description
NA
Coordinates
chr22:2633839-2635263:+
Coord C1 exon
chr22:2633839-2634140
Coord A exon
chr22:2634635-2634787
Coord C2 exon
chr22:2635162-2635263
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATCTGATTTCTCCTTCAGATT
3' ss Score
9.04
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGTTTGCCGCTCTGTTTCGCTGCGGCGGGGGCGCTTGCGCACTGCCGCTCTCTGGGCCTGATGAGGCGACGGCGCATGCGCGGAACGTCGCTTCCGCCTTTTCCCCGGCCCGGAGCCTACTGGCCGCCTTTGCGACAGCCTGAAGTGAGCGGCGGCGCCCGCGGGAGCGGAGCGAGGCGGCCGCGGTGCGATGAGGCCGCAGCAAGCGCCCGTGTCGGGCAAAGTGTTCATCCAGCGTGACTACAGTGGTGGGACACGCTGCCAGTTCCAGAGCAAGTTCCCGGCCGAGCTGGAGAACCGG
Seq A exon
ATTGATAGGCAGCAGTTTGAAGAGACTGTCCGAACGCTGAATAACCTTTATGCTGAAGCTGAGAAACTTGGGGGCCAATCCTACCTTGAAGGGTGTCTGGCCTGTCTGACTGCCTATACTATCTTCTTGTGCATGGAAACACATTATGAGAAG
Seq C2 exon
GTTCTAAAGAAAATTGCCAAGTTCATTCAGGAACAGAATGAGAAGATCTATGCTCCTCAGGGCCTCCTTCTGACCGACCCCATTGAAAGAGGACTAAGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003483-'1-3,'1-1,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=70.3)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCGACAGCCTGAAGTGAG
R:
AATGGGGTCGGTCAGAAGGAG
Band lengths:
257-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]