DreEX6033884 @ danRer10
Exon Skipping
Gene
ENSDARG00000036295 | golga7ba
Description
golgin A7 family, member Ba [Source:ZFIN;Acc:ZDB-GENE-050417-14]
Coordinates
chr1:54246313-54249852:+
Coord C1 exon
chr1:54246313-54246438
Coord A exon
chr1:54249404-54249556
Coord C2 exon
chr1:54249751-54249852
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTTTGCATGTGATTGGTCAGATC
3' ss Score
4.66
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TTCCACAACCTTCAGGAACTGAGACACAGCGCATCTCTGGCCAACAAGGTCTTCATTCAGAGAGACTACACCGATGGCACGGTCTGCAAGTTCCAGACCAAGTTCCCCTCCGAGTTAGACAGCAGG
Seq A exon
ATCGAGCGGACGCTGTTTGAGGACACGGTGAAGACGCTGAATACTTACTATGCAGAGGCGGAGAAGATCGGAGGCCAGTCTTACATAGAAGGATGTCTGGCCTGCCTTACAGTTTACCTCATCTTCCTGTGCATCGAGACGCGTTACGAGAAG
Seq C2 exon
GTGCTGAAGAAGATCTCGCGCTACATTCAGGAGCAGAATGAGAAAGTTTACGCTCCTCGAGGTCTCCTCATCACAGACCCGATAGAGAGAGGCATGAGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036295-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054786=Prominin=PU(46.1=97.6),PF102564=Erf4=PU(22.6=61.9)
A:
PF054786=Prominin=PD(51.7=90.2),PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACACAGCGCATCTCTG
R:
GACCCTCATGCCTCTCTCTATCG
Band lengths:
210-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]