HsaEX0027988 @ hg19
Exon Skipping
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family, member B [Source:HGNC Symbol;Acc:31668]
Coordinates
chr10:99619215-99624026:+
Coord C1 exon
chr10:99619215-99619340
Coord A exon
chr10:99623687-99623839
Coord C2 exon
chr10:99623925-99624026
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGCTCTGTCCCTTTCTCCAGATC
3' ss Score
11.24
5' ss Seq
AAGGTGGCC
5' ss Score
3.58
Exon sequences
Seq C1 exon
GTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCACTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTCCAGACCAAATTCCCCCCAGAGCTGGACAGCCGG
Seq A exon
ATCGAGCGGCAGCTCTTTGAAGAGACTGTGAAGACCCTCAACGGATTTTACGCAGAGGCTGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
Seq C2 exon
GTTCTCAAGAAGATTTCCCGCTACATCCAGGAGCAGAATGAGAAGATCTTTGCACCTCGAGGCCTCCTACTTACAGACCCTGTGGAGCGTGGGATGAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=61.9)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACAATCTGCAGGAGCTC
R:
AACCCTCATCCCACGCTCC
Band lengths:
228-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)