DreEX0035507 @ danRer10
Exon Skipping
Gene
ENSDARG00000105099 | golga7bb
Description
golgin A7 family, member Bb [Source:ZFIN;Acc:ZDB-GENE-090312-173]
Coordinates
chr13:39911270-39926358:+
Coord C1 exon
chr13:39911270-39911395
Coord A exon
chr13:39915348-39915500
Coord C2 exon
chr13:39926257-39926358
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAACTCAACACTGTGTGCAGATC
3' ss Score
3.26
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTCCACAACCTTCAGGAGCTGCGTCACACTGCGTCTCTGGCCACCAAGGTCTTCATTCAGAGAGATTACAGTGATGGCACCATCTGCAAATTCCAGACCAAGTTCCCCACAGAGCTGGACAGCAGG
Seq A exon
ATCGAGAGGAGCCTGTTTGAAGAAACAGTGAAGACGCTCAACTGCTATTACGCCGAGGCAGAAAAGATCAGCGGTCAGTCCTATCTGGAAAGCTGCCTGGCTTGTGCTACGGCCTACTTCATCTTCCTGTGCATGGAGACACGCTATGAAAAG
Seq C2 exon
ATCCTGAAAAAGATCAGCATGTACATCCAGGAGCAGAACGAGAAGATCTTTGCACCTAGAGGTTTGCTCTTAACAGACCCCATTGAGAGAGGCATGCGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105099_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=61.9)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACAACCTTCAGGAGCTG
R:
CTCGCATGCCTCTCTCAATGG
Band lengths:
226-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]