HsaEX6080501 @ hg19
Exon Skipping
Gene
ENSG00000147533 | GOLGA7
Description
golgin A7 [Source:HGNC Symbol;Acc:24876]
Coordinates
chr8:41348352-41363531:+
Coord C1 exon
chr8:41348352-41348484
Coord A exon
chr8:41355028-41355180
Coord C2 exon
chr8:41363430-41363531
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATATTTTCTTCTCTACAGATT
3' ss Score
9.47
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CGCGGGGTGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCGCCGGTGTCCGGAAAGGTGTTCATTCAGCGAGACTACAGCAGTGGCACACGCTGCCAGTTCCAGACCAAGTTCCCTGCGGAGCTGGAGAACCGG
Seq A exon
ATTGATAGGCAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAACCTTTATGCAGAAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGTTTGGCTTGTTTAACAGCATATACCATCTTCCTATGCATGGAAACTCATTATGAGAAG
Seq C2 exon
GTTCTGAAGAAAGTCTCCAAATACATTCAAGAGCAGAATGAGAAGATCTATGCTCCACAAGGCCTCCTCCTGACAGACCCTATTGAGCGAGGACTGCGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147533-'3-8,'3-5,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.8=70.3)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGGTGTCCTGTCCTC
R:
AACTCGCAGTCCTCGCTCAAT
Band lengths:
234-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)