HsaEX6080501 @ hg38
Exon Skipping
Gene
ENSG00000147533 | GOLGA7
Description
golgin A7 [Source:HGNC Symbol;Acc:HGNC:24876]
Coordinates
chr8:41490833-41506012:+
Coord C1 exon
chr8:41490833-41490965
Coord A exon
chr8:41497509-41497661
Coord C2 exon
chr8:41505911-41506012
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATATTTTCTTCTCTACAGATT
3' ss Score
9.47
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CGCGGGGTGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCGCCGGTGTCCGGAAAGGTGTTCATTCAGCGAGACTACAGCAGTGGCACACGCTGCCAGTTCCAGACCAAGTTCCCTGCGGAGCTGGAGAACCGG
Seq A exon
ATTGATAGGCAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAACCTTTATGCAGAAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGTTTGGCTTGTTTAACAGCATATACCATCTTCCTATGCATGGAAACTCATTATGAGAAG
Seq C2 exon
GTTCTGAAGAAAGTCTCCAAATACATTCAAGAGCAGAATGAGAAGATCTATGCTCCACAAGGCCTCCTCCTGACAGACCCTATTGAGCGAGGACTGCGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147533-'7-10,'7-5,10-10
Average complexity
S
Mappability confidence:
93%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.8=70.3)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGGTGTCCTGTCCTC
R:
AACTCGCAGTCCTCGCTCAAT
Band lengths:
234-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains