BtaEX6107140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027626 | GOLGA7
Description
Bos taurus golgin A7 (GOLGA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001035484]
Coordinates
chr27:36108533-36120116:+
Coord C1 exon
chr27:36108533-36108669
Coord A exon
chr27:36113770-36113922
Coord C2 exon
chr27:36120015-36120116
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATTCTTTTCTCGGTACAGATT
3' ss Score
6.42
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAGCGCGGCCCGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCGCCGGTGTCCGGGAAGGTCTTCATTCAGCGAGACTACAGCAGTGGCACCCGCTGCCAGTTCCAGACCAAGTTCCCCGCGGAGCTGGAGAACCGG
Seq A exon
ATTGATCGGCAGCAGTTTGAAGAAACAGTTCGGACCCTAAATAACCTTTACGCCGAGGCCGAGAAGCTTGGGGGCCAGTCGTATCTGGAAGGCTGCCTGGCTTGTCTAACGGCGTACACCATCTTCCTGTGCATGGAAACTCATTATGAGAAG
Seq C2 exon
GTCCTGAAGAAAGTCTCCAAATACATTCAAGAGCAGAATGAGAAGATCTATGCCCCACAAGGCCTCCTCCTGACAGATCCCATCGAGAGAGGGCTGCGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027626-'1-8,'1-0,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=70.3)
A:
PF102564=Erf4=FE(43.5=100)
C2:
PF102564=Erf4=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTGTCCTCGCCATGAG
R:
CTCGCAGCCCTCTCTCGAT
Band lengths:
226-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]