DreEX6087843 @ danRer10
Exon Skipping
Gene
ENSDARG00000057676 | golga7
Description
golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
Coordinates
chr10:20407819-20411529:+
Coord C1 exon
chr10:20407819-20407941
Coord A exon
chr10:20411198-20411350
Coord C2 exon
chr10:20411428-20411529
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGATTGTTTTGTTTTTTCAGATT
3' ss Score
10.77
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
Exon sequences
Seq C1 exon
ACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGG
Seq A exon
ATTGACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAA
Seq C2 exon
GTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057676-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=PU(22.6=63.4),PF130581=DUF3920=PU(15.7=31.7)
A:
PF102564=Erf4=FE(43.5=100),PF130581=DUF3920=FE(60.2=100)
C2:
PF102564=Erf4=FE(28.7=100),PF130581=DUF3920=PD(20.5=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTTGCAGGACCTG
R:
CTGAGCCCCCTCTCAATGGG
Band lengths:
218-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]