BtaEX6100313 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003294 | MRPL43
Description
39S ribosomal protein L43, mitochondrial [Source:RefSeq peptide;Acc:NP_776988]
Coordinates
chr26:21692055-21692758:-
Coord C1 exon
chr26:21692593-21692758
Coord A exon
chr26:21692397-21692503
Coord C2 exon
chr26:21692055-21692281
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACCCTTCTCGGGTCCCTCAGGGA
3' ss Score
8.62
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GCGAGACCCGGCTTGGCGACTGGAGAGCTGTGGCCATGACTGCCCGCGGGACCGCGAGCCGCTTCCTGACGAGTGTCCTGCACAACGGGCTGGGTCGCTACGTGCAGCAGCTGCAGCGGCTCAGCTTTAGCCTCAGCCGTGACGCGCCCTCGTCCCGCGGCGCCAG
Seq A exon
GGAGTTCGTGGAACGGGAGGTGACCGACTTCGCCCGCCGGAATCCCGGGGTCGTCATATATGTGAACCCGCGGCCGTGCTGTGTGCCGAGAGTAGTGGCCGAATACC
Seq C2 exon
TTAATGGGGCTGTGCGCGAGGAGAGCCTCAATTGCAAGTCGGTCGAGGAGATCGCCACGCTGGTGCAGAAGCTGGCCGACCAGTCGGGTTTGGACGTGATCCGCATCCGCAAGCCCTTCCACACGGACAGTCCTAGCATCCAGGGTCAGTGGCACCCCTTCACCAACAAACCGACAGCACTGGGCGGGCTGCGCCCTCGAGAGGTCCAGAATCCTGCCCCGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003294-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.027 C2=0.434
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
PF0504711=L51_S25_CI-B8=FE(67.9=100)
C2:
PF0504711=L51_S25_CI-B8=PD(28.3=19.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGACGAGTGTCCTGCA
R:
ACCCTGGATGCTAGGACTGTC
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]