RnoEX6007541 @ rn6
Exon Skipping
Gene
ENSRNOG00000014890 | Mrpl43
Description
mitochondrial ribosomal protein L43 [Source:RGD Symbol;Acc:1307593]
Coordinates
chr1:264755538-264756546:-
Coord C1 exon
chr1:264756219-264756546
Coord A exon
chr1:264756019-264756125
Coord C2 exon
chr1:264755538-264755906
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACCTTCGTTGGGTCCCCAGGGA
3' ss Score
7.98
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
TTCAGAAGCTCCACGCTCCCGCCCCCAGCTTCGCGTCACCACTCTCCTCTCTAGTGTTCTGTCCAAAACGTGGGTTGCCCGCACGCGCCGCTCGCTGTGACTCCGGAAGCAAAACTCTCCAGGGCGCCCATGCCCCCGGAAGCGGAAGTCACCGGTTAGTCCCGCCTTCCAGCTCTCCTGGCTGTCTGGCGGTAGCCATGACCGCGCGCGGTACTCCAAGCCGCTTTCTGACCAGCGTCCTCCATAATGGGCTAGGTCGCTACGTGCAGCAGCTGCAGCGTCTCAGCCTCACCCTCAGTCGGGATGCGCCCTCGTCCCGCGGCGCCAG
Seq A exon
GGAGTTCGTGGAACGCGAAGTGACGGACTTCGCCCGACGGAACCCAGGAGTCGTAATATACTTGAACCCTCGCCCGTGCGCTGTGCCGAGAATAGTGGCCGAATACC
Seq C2 exon
TTAACGGGGCTGTGCGCGAGGAAAATGTCAACAGCAAGTCGGTGGAGGAGATCACATCGCTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCTAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTACCTTCCACGGGCTGCGGCCCAGAGAACTCCAGGATTCTGCTCCAGCTTCAATATGAGCACAGTAGAGAACCAGGCTTTGGACAGGCCGAGTAGGTGGAGCCTACCAGCGGGGGAGTGTCCTGGAATAAAGAAGAGTTCCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGGGTTCGGTCCTCAGCTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014890-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.108 C2=0.338
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
PF0504711=L51_S25_CI-B8=FE(69.2=100)
C2:
PF0504711=L51_S25_CI-B8=PD(26.9=17.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCAAAACTCTCCAGGG
R:
GTTGACATTTTCCTCGCGCAC
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]