DreEX0047416 @ danRer10
Exon Skipping
Gene
ENSDARG00000076334 | mrpl43
Description
mitochondrial ribosomal protein L43 [Source:ZFIN;Acc:ZDB-GENE-040718-125]
Coordinates
chr12:33716344-33718113:+
Coord C1 exon
chr12:33716344-33716630
Coord A exon
chr12:33717134-33717240
Coord C2 exon
chr12:33717426-33718113
Length
107 bp
Sequences
Splice sites
3' ss Seq
AAATGATATTTCTCCTCTAGGGA
3' ss Score
8.39
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CGGATGAAACTGCGTAGCGTACTTGACATTGCACATGCCTTCTTGACTGCTGTCCAGTACATTTGATTATTAAAAGTGTGTGATATTACTCCGAGCAACACAGACAGCAATAAAAGAGTCAGCAGATCTGAATGTAGGATCTCTGTAAATGTGGACATGACAGCTCGAGGGACACCGAGTCGGTTTTTACAAAGCGTTCTTCAGAATGGAGTGGGTCGCTATGTCTGTCAGCTAAAGCGAATCTCTCTGATCTTCTCCAAGAAAGGACAGGGGTCTTTAGGAGTCAG
Seq A exon
GGATTTCATTGAAGAAGGCGTGGTCGACTTTGCAAAGAATAATCCGGGAACTGTGGTTTACATCTCACCTCAGTCCAGCAGAATTCCAAAAATAGTAGCTGAGTATT
Seq C2 exon
TGAATGGGAACGTGACTGAGGAGATAATCACCAACAAAACATCACAGCAGATAGCTGAACTTATAACCAAGATGTCCAATCAGTCAGGACTGGACATCATCCGTATTCGGAAACCTTTCCACACAGACAGCCCCAGCATCCAGGGCCAGTGGCACCCCTTCACAAACCGAGCCCCCAGCATTGACCCAGTTGGGCCACAACCAAAATAAGGACTTTTCCTCCAGTATGTATACTCTGACTGATGTATGAACTGTCGGATAAGCTGTGAATGAATGGAAATCAGCACATTCAACAGTCCGCTGATCATTTAAACCCGTTACTCATCAGTACTTTTCTTTTTGATGGAATTTGACAGTTTGTATAACAATTACATTGTTCTTCAATGACAATAATCCTTATAATGATAAAAATCCTTATAATATGCCCTGTTTACCGACATATAATTATGCTTCATTTGGATAAGTAAAGTTTTAACCTGTTGTTGACTTGTTCCCTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076334_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.362
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
PF0504711=L51_S25_CI-B8=FE(69.2=100),PF0344812=MgtE_N=PU(20.4=27.0)
C2:
PF0504711=L51_S25_CI-B8=PD(26.9=20.0),PF0344812=MgtE_N=PD(77.6=54.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAATGGAGTGGGTCGC
R:
GTTTGTGAAGGGGTGCCACTG
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]