MmuEX6033167 @ mm9
Exon Skipping
Gene
ENSMUSG00000025208 | Mrpl43
Description
mitochondrial ribosomal protein L43 [Source:MGI Symbol;Acc:MGI:2137229]
Coordinates
chr19:45079504-45080932:-
Coord C1 exon
chr19:45080754-45080932
Coord A exon
chr19:45080553-45080659
Coord C2 exon
chr19:45079504-45080430
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACCTTCGCCGGGTCTCGCAGGGA
3' ss Score
6.8
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGTTAGTCCCGCCCCCCGGCTCCGCGTCCTGGCTCTCTAACCGTAGCCATGACCGGTCGCGGGACTTCGAGCCGCTTTCTGACCAGCGTCCTCCATAATGGGCTAGGGCGTTACGTGCAGCAGCTGCAGCGCCTCAGCCTCAGCCTCAGCCGGGATGCGCCCTCGTCCCGCGGCGCCAG
Seq A exon
GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC
Seq C2 exon
TTAATGGGGCTGTGCGCGAGGAAAACGTCAACAGCAAGTCGGTGGAGGAGATCAAGTCGTTGGTGCAGAAGCTGGCAGACCAGTCCGGCTTGGATGTGATCCGCATCCGCAAGCCCTTCCACACGGACAACCCGAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAACGGACTGCCCTCCACGGGCTGCGGCCCAGAGAACTCCGGGATTCTGCTCCAGCTTCGATGCAAGCACAGTAAAGAACCAGGCGCTTTGGACCGTGAGAGGGATAGGATTGGTTCCTCTTTTGGATTTCAAGCTCAGGCCGAGTAGGTGGGTGGAGCCTACCAGCCGGGGCGTGGCCTGAGATAAAGAAGAACCTTTTCCTTTGCCCACTTGTAGCTAGGTGCAGTGACCTTGTGAATACCCTAATTCTGATTCAATTGGCCTCCTTGCAAGCTGAGATGTGAGAAGTGTACAACACTTGTACAAGGACCGTGTTTTCTGAAATACGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025208-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.165 A=0.149 C2=0.412
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
PF0504711=L51_S25_CI-B8=FE(69.2=100)
C2:
PF0504711=L51_S25_CI-B8=PD(26.9=17.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGGCTAGGGCGTTACGT
R:
CCGTTTGTTGGTGAAGGGGTG
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: