BtaEX6100667 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007243 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr26:25222975-25230664:+
Coord C1 exon
chr26:25222975-25223121
Coord A exon
chr26:25229339-25229479
Coord C2 exon
chr26:25230441-25230664
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTTTCACTCGTCAGGCC
3' ss Score
7.26
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GATGAAATAACGGAAATGAAGAGAAAATTAAAGATTATGACCCATCAGGTAGATCAATTGAAAGAAGAAATCTCAGCTAAGGAGTCGGCACTTGTGAAACTACATCTGGAGCAGCAGCGCATAGAAAAGGAGAAGGAAACGTTGAAG
Seq A exon
GCCGAGCTGCAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAAGCCGAGGAGAGAAAACTCCTGCGAATTATAGCAGAGGCTGATGGGGAGAGGCTGAGACAGAAGAAGGAATTGGACCAG
Seq C2 exon
GTCATCAGCGAGAGAGATATCCTTGGGTCACAGCTAGTTCGGCGCAATGATGAGTTGGCTTTGCTCTATGAGAAGATCAAGATTCAGCAGTCTGTGCTGAATAAAGGCGAGAGCCAGTATAACCAGAGGTTGGAGGACATGAGAATCCTCAAACTTGAGATCAAGAAGCTTCGCCGGGAGAAAGGGATTCTTGCCAGGAGTGTGGCCAATGTCGATGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007243-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACATCTGGAGCAGCAGC
R:
CAAGAATCCCTTTCTCCCGGC
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]