GgaEX0012252 @ galGal3
Exon Skipping
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25753186-25757068:+
Coord C1 exon
chr6:25753186-25753332
Coord A exon
chr6:25756350-25756490
Coord C2 exon
chr6:25756845-25757068
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTGACTCCACCAGGCT
3' ss Score
5.74
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GATGAGATAACAGAAATGAGGAAGAGGCTGAAAACTGTGACACATCAGGGGGATCAGCTGAAAGAGGAGATCACAAAGAAAGAAGAAGCTCTAGTGAAAGCACAACTAGAACATCAGCAACTAGAGAGGGAGAAGGAATCATTGAAA
Seq A exon
GCTGAGCTACTTAAGATGAAAAAACAAGCTCTGGAGACCAAGAACTTCATAGAAAATCAGGAGGCAGAAGAGAGAAAACTCCTAAAAATTATTGCTGAGGCTGATGCGGAGAGGCTGAAGCAGAATAAGGAATATGACCGG
Seq C2 exon
GTTATCAATGAGAGAGATGTCCTTGGGTCCCAGCTTGTTCGACGCAACGATGAGGTGGCTCTTCTCTATGAAAAGATCAAAATCCAGCAATCCATCTTAAACAAGGGTGAGACTCAGTACAGGCAGAGAATGGAAGACATCCGGCTTCTCAAGCTGGAGATCAGAAAACTTCGTCGTGAGAAGGGAATACTTGGTAAAACCGTGGCTAACGTAGAGGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF060057=DUF904=PU(63.0=61.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGGGGGATCAGCTGAA
R:
TGAGAAGCCGGATGTCTTCCA
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]