HsaEX6090359 @ hg38
Exon Skipping
Gene
ENSG00000120051 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr10:104393329-104400903:+
Coord C1 exon
chr10:104393329-104393475
Coord A exon
chr10:104399360-104399500
Coord C2 exon
chr10:104400680-104400903
Length
141 bp
Sequences
Splice sites
3' ss Seq
TATCTTCCACTCTTTGTCAGGCT
3' ss Score
6.55
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GATGAAATAACAGATATGAAGAGAAAGTTAAAGATTATGATCCATCAGGTAGATGAGCTGAAAGAAGACATCTCTGCCAAAGAGTCCGCACTTGTGAAGCTGCACCTGGAACAGCAGCGAATAGAAAAGGAAAAGGAAACATTGAAG
Seq A exon
GCTGAGCTGCAGAAGCTGAGACAACAAGCCCTGGAGACAAAACACTTTATTGAAAAGCAAGAAGCTGAAGAGAGAAAACTCCTGCGAATAATTGCTGAGGCTGACGGGGAGAGGTTGAGACAGAAGAAGGAATTAGACCAG
Seq C2 exon
GTCATCAGTGAGAGAGATATCCTGGGGTCTCAGCTTGTTCGGCGCAATGATGAGTTAGCTTTGCTCTATGAGAAGATCAAGATCCAACAGTCTGTGCTGAATAAAGGGGAGAGCCAGTACAACCAGAGGTTGGAGGACATGAGAATCCTCAGACTTGAGATCAAGAAGCTTCGCCGGGAAAAGGGGATTCTTGCCAGGAGTATGGCTAATGTTGAAGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-'17-22,'17-19,26-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGTGTGCTATTTGGCA
R:
AGGAGAGATTTGGGGATGGGG
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains