GgaEX0012252 @ galGal4
Exon Skipping
Gene
ENSGALG00000008417 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr6:23849486-23853368:+
Coord C1 exon
chr6:23849486-23849632
Coord A exon
chr6:23852650-23852790
Coord C2 exon
chr6:23853145-23853368
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTGACTCCACCAGGCT
3' ss Score
5.74
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GATGAGATAACAGAAATGAGGAAGAGGCTGAAAACTGTGACACATCAGGGGGATCAGCTGAAAGAGGAGATCACAAAGAAAGAAGAAGCTCTAGTGAAAGCACAACTAGAACATCAGCAACTAGAGAGGGAGAAGGAATCATTGAAA
Seq A exon
GCTGAGCTACTTAAGATGAAAAAACAAGCTCTGGAGACCAAGAACTTCATAGAAAATCAGGAGGCAGAAGAGAGAAAACTCCTAAAAATTATTGCTGAGGCTGATGCGGAGAGGCTGAAGCAGAATAAGGAATATGACCGG
Seq C2 exon
GTTATCAATGAGAGAGATGTCCTTGGGTCCCAGCTTGTTCGACGCAACGATGAGGTGGCTCTTCTCTATGAAAAGATCAAAATCCAGCAATCCATCTTAAACAAGGGTGAGACTCAGTACAGGCAGAGAATGGAAGACATCCGGCTTCTCAAGCTGGAGATCAGAAAACTTCGTCGTGAGAAGGGAATACTTGGTAAAACCGTGGCTAACGTAGAGGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGGGGGATCAGCTGAA
R:
TGAGAAGCCGGATGTCTTCCA
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]