DreEX0021160 @ danRer10
Exon Skipping
Gene
ENSDARG00000069435 | cfap58
Description
cilia and flagella associated protein 58 [Source:ZFIN;Acc:ZDB-GENE-060929-128]
Coordinates
chr1:47192013-47227080:+
Coord C1 exon
chr1:47192013-47192159
Coord A exon
chr1:47220239-47220379
Coord C2 exon
chr1:47226857-47227080
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTTAATTCAATCAGGCT
3' ss Score
4.84
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GATCAAAATGCTGAGATGAGACGCAAGGTAAAGATCGTGAACCACATGTTCGAGCAGCTGAAAGATGAAATAACAGCGAAAGAGGTGGCTTTAGACAAGGAGCGCCAGGAGTTCCAGCGTGTCGAGAGAGAGCGGGAAAATCTCAAG
Seq A exon
GCTGAGCTGCAGAAGATGAAGCTTCAGGCCCAAGAGACGAAGCAGCTGCTTGCGAAACAGCAGGCGCAGGAGCAGGAGCTGCTGAAGATCATAGCAGAGGCTGATGCTGAGAGAATTCGGCAGAAGAAAGAGCTGGATCAG
Seq C2 exon
GTGATAAGTGAGCGTGATCTCCTGGGGACACAGTTGGTGAAAAGAAATGATTCGCTGGCGCTACTGTATGAAAAGGTCAAAATCCAGCAGTCCATCTTGAACAAGGGCGAGGTGCACTACAACGAAAGATTGGAGGACATCAGAGTCCTGAAGATAGAGATCAAGAAGCAACGACGAGAAAAAAGCATCCTCAGCAAGACCGTAATAAACGTGGACGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069435-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAGATGAGACGCAAGG
R:
CCTCGCCCTTGTTCAAGATGG
Band lengths:
252-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]