BtaEX6100672 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007243 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr26:25192920-25200010:+
Coord C1 exon
chr26:25192920-25193114
Coord A exon
chr26:25195098-25195235
Coord C2 exon
chr26:25199851-25200010
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTCTGCATCTTTCAGATA
3' ss Score
9.35
5' ss Seq
AAAGTAAAC
5' ss Score
1.69
Exon sequences
Seq C1 exon
TTCCAACAAGAAATCCAGCAACGTCAGAATGAAGCTTCACGGGAGACCCGGAAGAAAGAAAAACTAGAGAAGGAGCTCAGGCAGATTCAGATGGACATGGACAGCAGGCAGACGGAAATCAGGGCGCTGCAGCAGTACGTGCAGAAGAGCAAGGAGGAGCTTCAGAGGCTGGAGCAGCAGCTGAAAGAGCAGAAG
Seq A exon
ATACTCAACGAGAGAGCCGCAAAGGAGCTGGAGCAGTTTCAGATGAGAAATGCTAAACTTCAGCAAGAGAACGAACAGCACAGTTTGGTTTGTGAGCAGCTATCCCAAGAAAACCAGCAGAAGGCGTTGGAGCTCAAA
Seq C2 exon
GCCAAAGAGGAAGAAGTCCATCAGATGCGCCTTGACATTGGGAAGCTCAACAAAATTAGAGAACAAATCCATAAGAAATTGCACCAGATTGAAGATCAAAAGGGAGAGGTGGAACAGCACAAGGAAACCCTGAAAAATCAGATCTTGGGACTAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007243-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.696 C2=0.426
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(52.0=100)
A:
PF115593=ADIP=PD(0.8=2.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTCAGGCAGATTCAGA
R:
GGGTTTCCTTGTGCTGTTCCA
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]