DreEX0021167 @ danRer10
Exon Skipping
Gene
ENSDARG00000069435 | cfap58
Description
cilia and flagella associated protein 58 [Source:ZFIN;Acc:ZDB-GENE-060929-128]
Coordinates
chr1:47149345-47159359:+
Coord C1 exon
chr1:47149345-47149539
Coord A exon
chr1:47152732-47152869
Coord C2 exon
chr1:47159200-47159359
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTCTTGCTGACAGATT
3' ss Score
9.39
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
CTTCAGCAGGAAATCCAGGTGCGTCAGAATGAGGTTCATCGGGAGACCAGGAGGAAGGAGAAGTTGGAAAAGGAAGTGAAGCAGTTTCAAACTGACCTGGAGTCCAAACAATCAGAGATTAAATTACTGACTCAGCAGAGCCAGCGTTTGCAGGATGATCAGCAGAAACTGGAACAACTGCTCCAGGAACACAAA
Seq A exon
ATTATAAATGAGAAAAGCAGTAAAGAAATGGAACAGCTCCAACATCGCAACACCAAACTGCAGCAAGATAATGAACAAAACTCCATCAACCTAGAGCAACTCTCCCAACAGAACCAACAGCGAGCATCAGACCTCAAG
Seq C2 exon
ATGAAGGAAGAGGAAGTAACTCAGCTGAAACAGGAGATCACTAAACTTACCAGACTGAGAGAGGGGGCGCAGAGGAGACTCAGACAGATGGAGGAGCAGAAAGCAGAGGTGGAGAATCAGAGAGAAACACTCAAGAATCAAATCACTGGACTAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069435_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=1.000 C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCAGGAGGAAGGAGAA
R:
TCTGTCTGAGTCTCCTCTGCG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]