GgaEX0012255 @ galGal3
Exon Skipping
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25738995-25743753:+
Coord C1 exon
chr6:25738995-25739189
Coord A exon
chr6:25741869-25742006
Coord C2 exon
chr6:25743594-25743753
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCCTTAATCTAACAGATG
3' ss Score
8.14
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTTCAGCAAGAAATCCAAATGCGAAACAATGAGGTATCACGAGAAGTTCGGAAGAAAGAAAAAATGGAGAAGGAGCTGAAAAATCTTCAAGCTGAAATAGTTAATAAGCAGACTGAGATCAAGAATTTACAGCAACGTATACAGAAGAACAAAGAGGAACAACTGAAAGTGGAACAACATCTAAAAGAGCAGATG
Seq A exon
ATGTTGAATGAAAGAACTGGTAAGGAACTTGAGCAATTTCAGATGAGAAATAATAAGCTTGTGCAAGAGAGTGAGCATCACAGTGTGATGTTTCAAGGAGTAGTGCAGGATCTTCAGAAAAAGACAGCGGAACTGAAA
Seq C2 exon
GCCAGAGATGATGAACTGACTCAAATGCACCTTGAAATTTCGAAGATGAACAAAGTAAGAGATGTTCTCCAGAGTAAGCTACGTGCTGCAGAGGATAAGAAAGTTGCTGCAGGACATGAGAGAGAGACCCTAAAAAGGCAAATATCTGGTCTAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.783 C2=0.630
Domain overlap (PFAM):
C1:
NO
A:
PF138511=GAS=PU(3.7=8.7)
C2:
PF138511=GAS=FE(48.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTGAAAAATCTTCAAGCTGA
R:
TCTCTCTCATGTCCTGCAGCA
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]