MmuEX6033564 @ mm10
Exon Skipping
Gene
ENSMUSG00000046585 | Cfap58
Description
cilia and flagella associated protein 58 [Source:MGI Symbol;Acc:MGI:2685815]
Coordinates
chr19:47949286-47955452:+
Coord C1 exon
chr19:47949286-47949480
Coord A exon
chr19:47952987-47953124
Coord C2 exon
chr19:47955293-47955452
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTCACTCCCCTCCTTCCAGATA
3' ss Score
10.24
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG
Seq A exon
ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA
Seq C2 exon
GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046585-'5-7,'5-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.870 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAAGAGCTCAGGCAGA
R:
CCTTCTGCTGCTCCACTTCTG
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types