HsaEX6090364 @ hg38
Exon Skipping
Gene
ENSG00000120051 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr10:104365814-104371054:+
Coord C1 exon
chr10:104365814-104366008
Coord A exon
chr10:104368423-104368560
Coord C2 exon
chr10:104370895-104371054
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCTCATTCCATCCCTTTCAGATA
3' ss Score
9.23
5' ss Seq
AAAGTAAAC
5' ss Score
1.69
Exon sequences
Seq C1 exon
TTCCAACAAGAAATCCAGCAACGTCAGAACGAAGCTTCCCGGGAGTTCCGGAAGAAGGAAAAACTAGAGAAAGAGCTCAAGCAGATTCAGGCAGACATGGACAGCAGGCAGACAGAAATAAAAGCCCTGCAGCAGTATGTGCAGAAGAGCAAGGAGGAGCTTCAGAAGCTGGAGCAGCAGCTGAAGGAGCAGAAG
Seq A exon
ATATTGAATGAGAGAGCTGCAAAGGAACTCGAGCAATTTCAGATGAGAAATGCTAAACTTCAGCAAGAGAATGAACAGCACAGTTTGGTCTGTGAGCAGCTATCCCAGGAAAACCAACAGAAGGCGTTGGAGCTCAAA
Seq C2 exon
GCCAAAGAGGAAGAAGTCCATCAAATGCGCCTTGACATCGGGAAGCTCAACAAAATCAGAGAACAAATTCATAAGAAATTGCACCACACCGAAGATCAAAAGGCAGAAGTCGAACAGCACAAAGAAACCCTAAAAAATCAGATTGTGGGATTAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-'11-6,'11-4,13-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.696 C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAAGCAGATTCAGGCAG
R:
GTGCTGTTCGACTTCTGCCTT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains