BtaEX6100674 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007243 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr26:25188291-25193114:+
Coord C1 exon
chr26:25188291-25188439
Coord A exon
chr26:25191870-25192026
Coord C2 exon
chr26:25192920-25193114
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTCGTGTTCTTCTTTCGTAGTAT
3' ss Score
7.78
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GAAATTGAAAAGGCCTGGAAGATGGTGGATTCAGCCTATGATAAAGAGCAGAAGGCAAAGGAGACGATTCTTGCCCTGAAGGAGGAAATAGTGAACCTAACCAAACTAGTCGAGCAAGGGTCTGGACTGTCTATGGACCAAGATAGCAA
Seq A exon
TATCCGGGATTTGCTGAAGTTCAAAGAAGAAGTGACAAAGGAGCGAGACCAGCTGTTATCAGAAGTGGTGAAATTGCGAGAGTGCTTAGCTCAGACCATTGAACAGCAGCAAGAAATGGAGCGGTCCAGGGAAGAGGCAGAGCAGGCCATCATCCAG
Seq C2 exon
TTCCAACAAGAAATCCAGCAACGTCAGAATGAAGCTTCACGGGAGACCCGGAAGAAAGAAAAACTAGAGAAGGAGCTCAGGCAGATTCAGATGGACATGGACAGCAGGCAGACGGAAATCAGGGCGCTGCAGCAGTACGTGCAGAAGAGCAAGGAGGAGCTTCAGAGGCTGGAGCAGCAGCTGAAAGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007243-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.477
Domain overlap (PFAM):
C1:
PF115593=ADIP=PU(2.4=6.0)
A:
PF115593=ADIP=FE(42.3=100)
C2:
PF115593=ADIP=FE(52.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACGATTCTTGCCCTGA
R:
CTCCTCCTTGCTCTTCTGCAC
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]