GgaEX0012254 @ galGal3
Exon Skipping
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25735641-25739189:+
Coord C1 exon
chr6:25735641-25735789
Coord A exon
chr6:25736846-25737002
Coord C2 exon
chr6:25738995-25739189
Length
157 bp
Sequences
Splice sites
3' ss Seq
TATCGTTTCCTTATTTCCAGTAT
3' ss Score
7.53
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGATTGAGAAAGCCTGGAAAATGGTGGACACAGCCTATGAAAAGGAGCAGAAAGCAAAGGAAACAATTCATTCACTACAAGAGGAAATAGCACACCTAACTAATTCAGTGGAGCAGGGATCTGGACTGTCCTCCAGTCAGGAGTACAA
Seq A exon
TATCAGTGAGTTGATAAAATACAAAGAAGAGATAACAAAGGAGAGAGATCAACTCTTGTCAGAGGTCGTGGAGTTACGTCAAAGTCTAACTCAAGCCACAGAGCAGCAGCAGGATGCAGAGAGGGCAAAGGATGAGGCAGATCAAGCTATTATGCAG
Seq C2 exon
CTTCAGCAAGAAATCCAAATGCGAAACAATGAGGTATCACGAGAAGTTCGGAAGAAAGAAAAAATGGAGAAGGAGCTGAAAAATCTTCAAGCTGAAATAGTTAATAAGCAGACTGAGATCAAGAATTTACAGCAACGTATACAGAAGAACAAAGAGGAACAACTGAAAGTGGAACAACATCTAAAAGAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'4-5,'4-2,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.460 A=0.453 C2=0.738
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PD(29.8=78.0),PF057916=Bacillus_HBL=PD(13.3=26.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGCCTATGAAAAGGAGCA
R:
GCTGTAAATTCTTGATCTCAGTCTGC
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event