DreEX0021166 @ danRer10
Exon Skipping
Gene
ENSDARG00000069435 | cfap58
Description
cilia and flagella associated protein 58 [Source:ZFIN;Acc:ZDB-GENE-060929-128]
Coordinates
chr1:47143598-47149539:+
Coord C1 exon
chr1:47143598-47143746
Coord A exon
chr1:47146283-47146439
Coord C2 exon
chr1:47149345-47149539
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACCTTGCTGAATGTTTGTAGTGT
3' ss Score
3.9
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GAAATTGACAAGGCCTGGAAAATGGTTGAAGCTTCACATGAAAAGGAGTTGCAGGCTAAAGAAACAATTAAAAAGCATAAGGAGGAAATCGCCAATCTAAACAATCTCGTGGAAAAAGGAGCCGGAGTCTCTGGGGGTCAAGAATACAG
Seq A exon
TGTGGGCGATCTGTTAAAGATCAAAGAGGAGCTGACCGAGCAGAGAGACAAGCTTCTGTCGGAGGTGGTGACACTTCGGGAAAACCTTACTAAAGCCACCGGTGCTCAGCAGGAGATCGAGGCTGAGAAGAACAAAGCCATGGACATGATTGCTCAG
Seq C2 exon
CTTCAGCAGGAAATCCAGGTGCGTCAGAATGAGGTTCATCGGGAGACCAGGAGGAAGGAGAAGTTGGAAAAGGAAGTGAAGCAGTTTCAAACTGACCTGGAGTCCAAACAATCAGAGATTAAATTACTGACTCAGCAGAGCCAGCGTTTGCAGGATGATCAGCAGAAACTGGAACAACTGCTCCAGGAACACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069435_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.358 C2=0.682
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGAAAATGGTTGAAGC
R:
TGTTTGGACTCCAGGTCAGTT
Band lengths:
248-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]