HsaEX6090366 @ hg38
Exon Skipping
Gene
ENSG00000120051 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr10:104362023-104366008:+
Coord C1 exon
chr10:104362023-104362171
Coord A exon
chr10:104364733-104364889
Coord C2 exon
chr10:104365814-104366008
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCTTCCTTTTTAGCAT
3' ss Score
11.83
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GAAATTGAAAAGGCCTGGAAGATGGTGGACTCAGCCTATGACAAAGAGCAGAAGGCCAAGGAGACGATTCTTGCTCTGAAAGAGGAAATAGTGAACCTGACCAAACTAGTGGAGCAGGGGTCTGGACTGTCAATGGACCAGCATAGCAA
Seq A exon
CATCCGAGATTTACTGAGGTTCAAAGAAGAAGTGACAAAGGAGAGAGACCAGCTCTTATCAGAAGTGGTAAAATTACGAGAATCCCTAGCTCAGACCACTGAACAGCAGCAGGAAACAGAGCGATCAAAAGAGGAGGCTGAACATGCCATCAGTCAG
Seq C2 exon
TTCCAACAAGAAATCCAGCAACGTCAGAACGAAGCTTCCCGGGAGTTCCGGAAGAAGGAAAAACTAGAGAAAGAGCTCAAGCAGATTCAGGCAGACATGGACAGCAGGCAGACAGAAATAAAAGCCCTGCAGCAGTATGTGCAGAAGAGCAAGGAGGAGCTTCAGAAGCTGGAGCAGCAGCTGAAGGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-'7-3,'7-2,10-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.453 C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCAGAAGGCCAAGGAGA
R:
CACATACTGCTGCAGGGCTTT
Band lengths:
247-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains