GgaEX0012254 @ galGal4
Exon Skipping
Gene
ENSGALG00000008417 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr6:23831941-23835489:+
Coord C1 exon
chr6:23831941-23832089
Coord A exon
chr6:23833146-23833302
Coord C2 exon
chr6:23835295-23835489
Length
157 bp
Sequences
Splice sites
3' ss Seq
TATCGTTTCCTTATTTCCAGTAT
3' ss Score
7.53
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGATTGAGAAAGCCTGGAAAATGGTGGACACAGCCTATGAAAAGGAGCAGAAAGCAAAGGAAACAATTCATTCACTACAAGAGGAAATAGCACACCTAACTAATTCAGTGGAGCAGGGATCTGGACTGTCCTCCAGTCAGGAGTACAA
Seq A exon
TATCAGTGAGTTGATAAAATACAAAGAAGAGATAACAAAGGAGAGAGATCAACTCTTGTCAGAGGTCGTGGAGTTACGTCAAAGTCTAACTCAAGCCACAGAGCAGCAGCAGGATGCAGAGAGGGCAAAGGATGAGGCAGATCAAGCTATTATGCAG
Seq C2 exon
CTTCAGCAAGAAATCCAAATGCGAAACAATGAGGTATCACGAGAAGTTCGGAAGAAAGAAAAAATGGAGAAGGAGCTGAAAAATCTTCAAGCTGAAATAGTTAATAAGCAGACTGAGATCAAGAATTTACAGCAACGTATACAGAAGAACAAAGAGGAACAACTGAAAGTGGAACAACATCTAAAAGAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'2-4,'2-1,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.540 A=0.453 C2=0.738
Domain overlap (PFAM):
C1:
PF148171=HAUS5=FE(32.2=100),PF131661=AAA_13=FE(20.8=100)
A:
PF148171=HAUS5=FE(34.2=100),PF131661=AAA_13=FE(22.0=100)
C2:
PF148171=HAUS5=PD(8.6=20.0),PF131661=AAA_13=FE(27.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGCCTATGAAAAGGAGCA
R:
GCTGTAAATTCTTGATCTCAGTCTGC
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]