GgaEX1015033 @ galGal3
Exon Skipping
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25736846-25742006:+
Coord C1 exon
chr6:25736846-25737002
Coord A exon
chr6:25738995-25739189
Coord C2 exon
chr6:25741869-25742006
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTATTATTACAGCTT
3' ss Score
8.35
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TATCAGTGAGTTGATAAAATACAAAGAAGAGATAACAAAGGAGAGAGATCAACTCTTGTCAGAGGTCGTGGAGTTACGTCAAAGTCTAACTCAAGCCACAGAGCAGCAGCAGGATGCAGAGAGGGCAAAGGATGAGGCAGATCAAGCTATTATGCAG
Seq A exon
CTTCAGCAAGAAATCCAAATGCGAAACAATGAGGTATCACGAGAAGTTCGGAAGAAAGAAAAAATGGAGAAGGAGCTGAAAAATCTTCAAGCTGAAATAGTTAATAAGCAGACTGAGATCAAGAATTTACAGCAACGTATACAGAAGAACAAAGAGGAACAACTGAAAGTGGAACAACATCTAAAAGAGCAGATG
Seq C2 exon
ATGTTGAATGAAAGAACTGGTAAGGAACTTGAGCAATTTCAGATGAGAAATAATAAGCTTGTGCAAGAGAGTGAGCATCACAGTGTGATGTTTCAAGGAGTAGTGCAGGATCTTCAGAAAAAGACAGCGGAACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.738 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138511=GAS=PU(3.7=8.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTTGTCAGAGGTCGTGGA
R:
TCAGTTCCGCTGTCTTTTTCTGA
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]